Green Archiving For USF Faculty: Getting Started

  1. Update your CV to include all work completed since arriving at USF.
  2. Write a short email giving us permission to post your research. We will seek copyright permission to post the digital item(s).
  3. Attach your CV and send the email to: scholarcommons@usf.edu

      It's that easy!

If you would like to self-submit your scholarly works you can submit content here.

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Submissions from 2016

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Fatality Rates for Crashes Involving Heavy Vehicles on Highways: A Random Parameter Tobit Regression Approach, Mouyid B. Islam and Salvador Hernandez

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Award-Winning Scholarship and the Importance of Academic Journals, Paul T. Jaeger, Karen Kettnich, Natalie Greene Taylor, and Ursula Gorham

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Signal Enhanced Holographic Fluorescence Microscopy with Guide-star Reconstruction, Changwon Jang, David C. Clark, Jonghyun Kim, Byoungho Lee, and Myung K. Kim

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Emotional Confidants in Ethnic Communities: Social Network Analysis of Korean American Older Adults, Yuri Jang PhD, Kyungmin Kim PhD, Nan Sook Park, and David A. Chiriboga

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Health Vulnerability of Immigrants with Limited English Proficiency: A Study of Older Korean Americans, Yuri Jang, Hyunwoo Yoon, Nan Sook Park, and David A. Chiriboga

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Darwinian Sex Roles Confirmed across the Animal Kingdom, Tim Janicke, Ines K. Häderer, Marc J. Lajeunesse, and Nils Anthes

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NEDDylation Promotes Stress Granule Assembly, Aravinth Kumar Jayabalan, Anthony Sanchez, Ra Young Park, Sang Pil Yoon, Gum-Yong Kang, Je-Hyun Baek, Paul Anderson, Younghoon Kee, and Takbum Ohn

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Combined Effects of Pesticides and Trematode Infections on Hourglass Tree Frog Polypedates cruciger., Uthpala A. Jayawardena, Jason R. Rohr, Ayanthi N. Navaratne, Priyanie H. Amerasinghe, and Rupika S. Rajakaruna

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Glycine N-acyltransferase-like 3 is Responsible for Long-chain N-acylglycine Formation in N18TG2 Cells, Kristen A Jeffries, Daniel R Dempsey, Emma K Farrell, Ryan L Anderson, Gabrielle J Garbade, Tatyana S Gurina, Imran Gruhonjic, Carly A Gunderson, and David J Merkler

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The Devastating Impact of the 2010 Eruption of Merapi Volcano, Indonesia, Susanna F. Jenkins, Jean-Christophe Komorowski, Peter J. Baxter, Sylvain J. Charbonnier, Noer Cholik, and Surono

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A Low-loss Metasurface Antireflection Coating on Dispersive Surface Plasmon Structure, Jiyeon Jeon, Khagendra Bhattarai, Deok-Kee Kim, Jun Oh Kim, Augustine Urbas, Sang Jun Lee, Zahyun Ku, and Jiangfeng Zhou

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A Practical Application of Reduced-Copper Antifouling Paint in Marine Biological Research, Andrea S Jerabek, Kara R Wall, and Christopher D Stallings

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The Great Chain of Being: Manifesto on the Problem of Agency in Science Communication, Meredith A. Johnson and Nathan Johnson

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Scholar Commons Annual Report: FY 2014-2015, Chelsea Johnston, Carol Ann Borchert, and Jason Boczar

Controller, Steven E. Jones

New Media and Modeling: Games and the Digital Humanities, Steven E. Jones

Roberto Busa, S. J., and the Emergence of Humanities Computing: The Priest and the Punched Cards, Steven E. Jones

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The Emergence of the Digital Humanities (as the Network is Everting), Steven E. Jones

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Counter Machines and Crystallographic Structures, Natasha Jonoska, Mile Krajcevski, and Gregory McColm

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Performing the ‘Two-Body Problem’: An Analysis of Academic Couples’ Career Sensemaking as Revealed Through Joint Storytelling, Jane Jorgenson

Radiomics of Lung Nodules: A Multi- Institutional Study of Robustness and Agreement of Quantitative Imaging Features, Jayashree Kalpahty-Cramer, Artem Mamomov, Binsheng Zhao, Lin Lu, Dmitry Cherezov, Sandy Napel, Sebastian Echegrary, Daniel Rubin, Michael McNitt-Gray, and Dmitry Goldgof

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A Buffer Model Account of Behavioral and ERP Patterns in the Von Restorff Paradigm, Siri-Maria Kamp, Melissa Lehman, Kenneth J. Malmberg, and Emanuel Donchin

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Subsidence along the Atlantic Coast of North America: Insights from GPS and Late Holocene Relative Sea Level Data, Makan A. Karegar, Timothy H. Dixon, and Simon E. Engelhart

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Communication Perspectives on a Luxury Brand Organization: The Case of Georg Jensen, Esben Karmark, Robyn Remke, Patrice M. Buzzanell, Brigid Carroll, Gail Fairhurst, Flemming Holm, and Lars Thøger Christensen

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Seascapes as a New Vernacular for Pelagic Ocean Monitoring, Management and Conservation, Maria T. Kavanaugh, Matthew J. Oliver, Francisco P. Chavez, Ricardo M. Letelier, Frank E. Muller-Karger, and Scott C. Doney

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Building a Concept Inventory for Numerical Methods: a Chronology, Autar Kaw, Yingyan Lou, Andrew Scott, and Ronald L. Miller

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Role of Deubiquitinating Enzymes in DNA Repair, Younghoon Kee and Tony T. Huang

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Using Narrative Inquiry to Understand Persistently Disciplined Middle School Students, Brianna L. Kennedy-Lewis, Amy S. Murphy, and Tanetha J. Grosland

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Molecular Mechanism of Protein Kinase Recognition and Sorting by the Hsp90 Kinome-Specific Cochaperone Cdc37, Dimitra Keramisanou, Adam Aboalroub, Ziming Zhang, Wenjun Liu, Devon Marshall, Andrea Diviney, Randy W. Larsen, Ralf Landgraf, and Ioannis Gelis

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Identification of Neuregulin-2 as a Novel Stress Granule Component, Jin Ah Kim, Aravinth K. Jayabalan, Vinoth K. Kothandan, Ramesh Mariappan, Younghoon Kee, and Takbum Ohn

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Human-Associated Bacteroides spp. and Human Polyomaviruses as Microbial Source Tracking Markers in Hawaii, Marek Kirs, Roberto A Caffaro-Filho, Mayee Wong, Valerie J. Harwood, Philip Moravcik, and Roger S Fujioka

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Research First? Assessing the Role of Special Collections Librarians in Academia, Matthew Knight and Andrew Huse

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Ketamine Psychedelic Psychotherapy: Focus on its Pharmacology, Phenomenology, and Clinical Applications, Eli Kolp, Harris L. Friedman, Evgeny Krupitsky, Karl Jansen, Mark Sylvester, M. Scott Young, and Anna Kolp

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Discriminability and Perceptual Saliency of Temporal and Spectral Cues for Final Fricative Consonant Voicing in Simulated Cochlear-Implant and Bimodal Hearing, Ying-Yee Kong, Matthew B. Winn, Katja Poelmann, and Gail S. Donaldson

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Positive Affectivity is Dampened in Youths with Histories of Major Depression and Their Never-Depressed Adolescent Siblings, Maria Kovacs, Lauren M. Bylsma, Ilya Yaroslavsky, Jonathan Rottenberg, Charles J George, Enikő Kiss, Kitti Halas, István Benák, Ildiko Baji, Ágnes Vetro, and Krisztina Kapornai

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On Fast Calculation of Addition Chains for Isogeny-Based Cryptography, Brian Koziel, Reza Azarderakhsh, David Jao, and Mehran Mozaffari Kermani

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Fast Hardware Architectures for Supersingular Isogeny Diffie-Hellman Key Exchange on FPGA, Brian Koziel, Reza Azarderakhsh, and Mehran Mozaffari Kermani

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NEON-SIDH: Efficient Implementation of Supersingular Isogeny Diffie-Hellman Key Exchange Protocol on ARM, Brian Koziel, Amir Jalali, Reza Azarderakhsh, David Jao, and Mehran Mozaffari Kermani

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Integrating Ground Penetrating Radar, Lidar, and Geologic Mapping to Image Fault Displacements at Mount Mazama (Crater Lake), Oregon, Sarah Kruse, Joel E. Robinson, Charles R. Bacon, Elisabeth Gallant, and Judy McIlrath

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Inferring Origin-Destination Pairs and Utility-Based Travel Preferences of Shared Mobility System Users in a Multi-Modal Environment, Anshuman Anjani Kumar, Jee Eun Kang, Changhyun Kwon, and Alexander Nikolaev

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Julia Programming for Operations Research: A Primer on Computing, Changhyun Kwon

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Method for Measuring the Unbinding Energy of Strongly-bound Membrane-associated Proteins, Elisa La Bauve, Briana C. Vernon, Dongmei Ye, David M. Rogers, Cathryn M. Siegrist, Bryan D. Carson, Susan B. Rempe, Aihua Zheng, Margaret Kielian, Andrew P. Shreve, and Michael S. Kent

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Multidisciplinary Studies of the 2015-2016 Eruption of Momotombo Volcano, Peter C. La Femina, Diana C. Roman, Charles Connor, Laura Connor, Timothy Dixon, Maureen D. Feineman, Elisabeth Gallant, Halldor Geirsson, Callan Glover, Joshua M. Rinehart, Gorki Ruiz, Armando Saballos, Wilfried Strauch, Virginia Tenorio, Christelle Wauthier, Peter W. Webley, and Kendall Wnuk

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Knee Orthosis with Variable Stiffness and Damping that Simulates Hemiparetic Gait, Christina-Anne Lahiff, Tyagi Ramakrishnan, Seok H. Kim, and Kyle B. Reed

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The Network K-Function in Context: Examining the Effects of Network Structure on the Network K-Function, David Lamb, Joni A. Downs, and Chanyoung Lee

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Encrustation of Inarticulate Brachiopods on Scaphitid Ammonites and Inoceramid Bivalves from the Upper Cretaceous U. S. Western Interior, Neil H. Landman, Joshua S. Slattery, and Peter J. Harries

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Florida Water-CAT: Making it Easier to Share Metadata about Chemical, Physical and Biological Water Monitoring Activities, Shawn M. Landry and Jan Allyn

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Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species, Stephanie N. Lawler, Christina A Kellogg, Scott C. France, Rachel W. Clostio, Sandra D. Brooke, and Steve W. Ross

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Generation of Germ-Free /Ciona intestinalis for Studies of Gut-Microbe Interactions, Brittany A Leigh, Assunta Liberti, and Larry J Dishaw

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High Prevalence of Chlamydia Trachomatis and Neisseria Gonorrhoeae Infections in Anal and Pharyngeal Sites Among a Community-Based Sample of Men Who Have Sex with Men and Transgender Women in Lima, Peru, Segundo R. Leon, Eddy R. Segura, Kelika A. Konda, Juan A. Flores, Alfonso Silva-Santisteban, Jerome T. Galea, Thomas J. Coates, Jeffrey D. Klausner, and Carlos F. Caceres

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New URJC-1 Material with Remarkable Stability and Acid-Base Catalytic Properties, Pedro Leo, Ferdnando Martinez, Guillermo Calleja, David Briones, and Lukasz Wojtas

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Toward a Pan-cultural Typology of Deception Motives, Timothy R. Levine, Mohamed Vaqas Ali, Marleah Dean, Rasha A. Abdulla, and Karina Garcia-Ruano

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Response of Wetland Soil Carbon to Groundwater Conservation: Probabilistic Outcomes from Error Propagation, David B. Lewis

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Creation of a New Type of Ion Exchange Material for Rapid, High-capacity, Reversible and Selective Ion Exchange without Swelling and Entrainment, Baiyan Li, Yiming Zhang, Dingxuan Ma, Zhenyu Xing, Tianliang Ma, Zhan Shi, Xiulei Ji, and Shengqian Ma

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Olivine and Melt Inclusion Chemical Constraints on the Source of Intracontinental Basalts from the Eastern North China Craton: Discrimination of Contributions from the Subducted Pacific Slab, Hong-Yan Li, Yi-Gang Xu, Jeffrey G. Ryan, Xiao-Long Huang, Zhong-Yuan Ren, Hua Guo, and Zhen-Guo Ning

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Boron Isotopes Reveal Multiple Metasomatic Events in the Mantle Beneath the Eastern North China Craton, Hong-Yan Li, Zhou Zhou, Jeffrey G. Ryan, Gang-Jian Wei, and Yi-Gang Xu

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Processing of Individual Items during Ensemble Coding of Facial Expressions, Huiyun Li, Luyan Ji, Ke Tong, Naixin Ren, Wenfeng Chen, Chang Hong Liu, and Xiaolan Fu

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Rube Goldberg Salad System: Teaching Systems Theory in Communication, Jasmine R. Linabary, Ziyu Long, Ashton Mouton, Ranjani L. Rao, and Patrice M. Buzzanell

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Video-Based 3D Reconstruction, Laparoscope Localization and Deformation Recovery for Abdominal Minimally Invasive Surgery: A Survey, Bingxiong Lin, Yu Sun, Xiaoning Qian, Dmitry Goldgof, Richard D. Gitlin, and Yuncheng You

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Crystal Structure of Ethyl 4-[(E)-(4-hy-droxy-3-meth-oxy-benzyl-idene)amino]-benzoate: a p-hy-droxy Schiff Base, Jing Ling, Padmini Kavuru, Lukasz Wojtas, and Keith Chadwick

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High-Spectral Inversion Based on Characteristic Band in the Three-River Headwater Region of Soil Total-Nitrogen, Hui Lin, Ruiliang Pu, Lijuan Wang, Changchun Li, and Chongying Shao

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Danger Alert: Mitigating Wrong-Way Driving through Red RRFB Implementation, Pei-Sung Lin and Seckin Ozkul

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Evaluation on the Perceived Effectiveness of Red RRFB Configurations to Reduce Wrong-Way Driving, Pei-Sung Lin, Seckin Ozkul, and Chester Chandler III

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Impact of Connected Vehicles and Autonomous Vehicles on Future Transportation, Pei-Sung Lin, Zhenyu Wang, and Rui Guo

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A Pilot Study on Interactions between Drivers and Pedestrian Features at Signalized Intersections-Using the SHRP2 Naturalistic Driving Study Data, Pei-Sung Lin, Zhenyu Wang, Rui Guo, and Achilleas Kourtellis

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Thin InSb Layers with Metallic Gratings: A Novel Platform for Spectrally-Selective THz Plasmonic Sensing, Shuai Lin, Khagendra Bhattarai, Jiangfeng Zhou, and Diyar Talbayev

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Task-Oriented Grasp Planning Based on Disturbance Distribution, Yun Lin and Yu Sun

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Scaling Law for Electrocaloric Temperature Change in Antiferroelectrics, Sergey Lisenkov, B. K. Mani, E. Glazkova, C. W. Miller, and Inna Ponomareva

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Offshore Forcing on the “Pressure Point” of the West Florida Shelf: Anomalous Upwelling and Its Influence on Harmful Algal Blooms, Yonggang Liu, Robert H. Weisberg, Jason M. Lenes, Lianyuan Zheng, Katherine Hubbard, and John J. Walsh

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Patterns of the Loop Current System and Regions of Sea Surface Height Variability in the Eastern Gulf of Mexico Revealed by the Self-Organizing Maps, Yonggang Liu, Robert H. Weisberg, Stefano Vignudelli, and Gary T. Mitchum

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Ultrafiltration and Microarray for Detection of Microbial Source Tracking Marker and Pathogen Genes in Riverine and Marine Systems, Xiang Li, Valerie J. Harwood, Bina Nayak, and Jennifer L Weidhaas

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Synchronicity between Ice Retreat and Phytoplankton Bloom in Circum‐Antarctic Polynyas, Yun Li, Rubao Ji, Meibing Jin, and Julienne Stroeve

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What’s Scale Got to do With It? Models for Urban Tree Canopy, Dexter H. Locke, Shawn M. Landry, J. M. Grove, and Rinku R. Chowdhury

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Positioning Work Amid Discontinuities and Continuities: Chinese Post80s Workers’ Dialogical Constructions of Meanings of Work, Ziyu Long, Patrice M. Buzzanell, and Kai Kuang

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Enhanced Nutrient Management of Stormwater through a Field Demonstration of Nitrogen Removal in a Modified Bioretention System, Emma V. Lopez, Thomas J. Lynn, Mackenzie Peterson, Sarina Ergas, Maya A. Trotz, and James Mihelcic

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A Wildlife Movement Approach to Optimally Locate Wildlife Crossing Structures, Rebecca W. Loraamm and Joni A. Downs

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Intramolecular 1,5-C(Sp3)–H Radical Amination via Co(II)-Based Metalloradical Catalysis for Five-Membered Cyclic Sulfamides, Hongjian Lu, Kai Lang, Huiling Jiang, Lukasz Wojtas, and X Peter Zhang

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Population Analysis of Adverse Events in Different Age Groups Using Big Clinical Trials Data, Jake Luo, Christina Eldredge, Chi C. Cho, and Ron A. Cisler

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TiO2-Based Nanomaterials for Advanced Environmental and Energy-Related Applications, Xujie Lü, Baoyu Xia, Yefeng Yang, and Hao Tang

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Sunlight Induced Chlorophyll fluorescence in the Near-Infrared Spectral Region in Natural Waters: Interpretations of the Narrow Reflectance Peak around 761nm, Yingcheng Lu, Linhai Li, Minwei Zhang, Shaojie Sun, and Chunguang Lv

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Data Management Best Practices for Education-Based Funding: Finding Outlets for Both Assessment and Research Data Generated by the Students, James H. MacDonald Jr., Sven P. Holbik, Jeffrey G. Ryan, Rosemary Hickey-Vargas, and Mary A. Beck

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Integrating a Course-Based Undergraduate Research Experience (CURE) by Expanding the use of Online Remote Electron Microscopy in the Classroom: An NSF Sponsored Tues Opportunity, James H. MacDonald Jr., Jeffrey G. Ryan, Rosemary Hickey-Vargas, Sven P. Holbik, and Mary A. Beck

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Unique Correlates of Heart Failure and Cancer Caregiver Satisfaction With Hospice Care, Meredith A. MacKenzie, Harleah G. Buck, Salimah H. Meghani, and Barbara Riegel

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Eigenstress Model for Electrochemistry of Solid Surfaces, Hongxin Ma, Xilin Xiong, Panpan Gao, Xi Li, Yu Yan, Alex A. Volinsky, and Yanjing Su

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Thermal Comfort and Perception Inside Air-Conditioned Areas, Ahmad Manasrah, Rasim O. Guldiken, and Kyle B. Reed

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Context and the Advancement of a Global Science of Human Development: A Commentary, Kofi Marfo

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Purposeful Entanglements: A New Materialist Analysis of Transformative Interviews, Travis M. Marn and Jennifer R. Wolgemuth

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Structural and Activity Characterization of Human PHPT1 after Oxidative Modification, Daniel R. Martin, Priyanka Dutta, Shikha Mahajan, Sameer Varma, and Stanley M. Stevens Jr.

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Activating Clinical Trials: A Process Improvement Approach, Diego Martinez, Athanasios Tsalatsanis, Ali Yalcin, José L. Zayas-Castro, and Benjamin Djulbegovic

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Restricted Mobility of Specific Functional Groups Reduces Anti-cancer Drug Activity in Healthy Cells, Murillo L. Martins, Rosanna Ignazzi, Juergen Eckert, Benjamin Watts, Ramon Kaneno, Willian F Zambuzzi, Luke Daemen, Margarida J Saeki, and Heloisa N Bordallo

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COMT and OPRM1 Genotype Associations with Daily Knee Pain Variability and Activity Induced Pain, Lynn M. Martire, Stephanie J. Wilson, Brent J. Small, Yvette P. Conley, Piotr K. Janicki, and Martin J. Sliwinski

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Digital Storytelling as Racial Justice: Digital Hopes for Deconstructing Whiteness in Teacher Education, Cheryl E. Matias and Tanetha J. Grosland

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Factors Associated with Married Women’s Support of Male Circumcision for HIV Prevention in Uganda: A Population Based Cross–Sectional Study, Komi Mati, Korede K. Adegoke, and Hamisu M. Salihu

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How is Image Seeking and Use Studied: Theoretical Models and Research Methods, Kystyna K. Matusiak, Abebe Rorissa, Dan Alberston, and JungWon Yoon

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Random Walks in a Sparse Random Environment, Anastasios Matzavinos, Alexander Roitershtein, and Youngsoo Seol

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Attention Demands of Language Production in Adults Who Stutter, Nathan D. Maxfield, Wendy L. Olsen, Daniel Kleinman, Stefan A. Frisch, Victor S. Ferreira, and Jennifer J. Lister

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Fear Conditioning and Extinction in Youth with Obsessive-compulsive Disorder, Joseph F. McGuire, Scott P. Orr, Monica S. Wu, Adam B. Lewin, Brent J. Small, Vicky Phares, Tanya K. Murphy, Sabine Wilhelm, Daniel S. Pine, Daniel Geller, and Eric A. Storch

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Inactivation of Peptidylglycine α-hydroxylating Monooxygenase by Cinnamic Acid Analogs, Neil R. McIntyre, Edward W. Lowe Jr, Matthew R. Battistini, James W. Leahy, and David J. Merkler

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Association between Sexual Role and HIV Status Among Peruvian Men Who Have Sex with Men Seeking an HIV Test: A Cross-Sectional Analysis, Sarah A. McLean, Jerome T. Galea, Holly J. Prudden, Gino Calvo, Hugo Sánchez, and Brandon Brown

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Planning for climate change: The Need for Mechanistic Systems-based Approaches to Study Climate Change Impacts on Diarrheal Diseases, Jonathan E. Mellor, Karen Levy, Julie Zimmerman, Mark Elliott, Jamie Bartram, Elizabeth Carlton, Thomas Clasen, Rebecca Dilingham, Joseph Eisenberg, Richard Guerrant, Daniele Lantagne, James Mihelcic, and Kara Nelson