Green Archiving For USF Faculty: Getting Started

  1. Update your CV to include all work completed since arriving at USF.
  2. Write a short email giving us permission to post your research. We will seek copyright permission to post the digital item(s).
  3. Attach your CV and send the email to: scholarcommons@usf.edu

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If you would like to self-submit your scholarly works you can submit content here.

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Submissions from 2018

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Phage Puppet Masters of the Marine Microbial Realm, Mya Breitbart, Chelsea Bonnain, Kema Malki, and Natalie Sawaya

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Elementary Student Outreach Activity Demonstrating the Use of Phage Therapy Heroes to Combat Bacterial Infections, Mya Breitbart, Kema Malki, Natalie Sawaya, Chelsea Bonnain, and Mark Martin

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The Effect of Acute Physical Pain on Subsequent Negative Emotional Affect: A Meta-Analysis, Konrad Bresin, Leah Kling, and Edelyn Verona

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The Effect of Laboratory Manipulations of Negative Affect on Alcohol Craving and Use: A Meta-Analysis, Konrad Bresin, Yara Mekawi, and Edelyn Verona

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An Electron Transfer driven Magnetic Switch: Ferromagnetic Exchange and Spin Delocalization in Iron Verdazyl Complexes, David J. R. Brook, Connor Fleming, Dorothy Chung, Cardius Richardson, Servando Ponce, Raja Das, Hariharan Srikanth, Ranko Heindl, and Bruce C. Noll

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The Mysterious Polyamines, the Enigmatic Barr Body, and Lupus: Comment on the Article by Kim et al., Wesley Brooks

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The Need to Track Payment Incentives to Participate in HIV Research, Brandon Brown, Jerome Galea, Karine Dubé, Peter Davidson, Kaveh Khoshnood, Lisa Holtzman, Logan Marg, and Jeff Taylor

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Crucial but Understudied: Incentives in Hiv Research, Brandon Brown, Jerome T. Galea, and Karine Dubé

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The Relationship between Anogenital HPV Types and Incident HIV Infection Among Men who Have Sex with Men and Transgender Women in Lima, Peru: Findings from a Prospective Cohort Study, Brandon Brown, Logan Marg, Segundo R. Leon, Cynthia Chen, Junice Ng Yi Siu, Gino Calvo, Hugo Sánchez, and Jerome T. Galea

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Age and Racial Disparities in Substance Use and Self-Reported Viral Suppression among Men who have Sex with Men with HIV, Monique J. Brown, Julianne M. Serovich, Tanja C. Laschober, and Judy A. Kimberly

CCAR‐1 is a Negative Regulator of the Heat‐Shock Response in Caenorhabditis elegans, Jessica Brunquell, Rachel Raynes, Philip Bowers, Stephanie Morris, Alana Snyder, Doreen Lugano, Andrew Deonarine, and Sandy D. Westerheide

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Organic Complexation of Iron in the Eastern Tropical South Pacific: Results From US GEOTRACES Eastern Pacific Zonal Transect (GEOTRACES Cruise GP16), Kristen N. Buck, Peter N. Sedwick, Bettina Sohst, and Craig A. Carlson

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Looking Across the Chapters: Reflections and Enduring Questions, Rebecca W. Burns

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NAPDS Policy, Advocacy, and External Relations: A Year of Progress, Rebecca W. Burns

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Teacher Leader Preparation and Development in PDS: Themes and Recommendations, Rebecca W. Burns

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“White Teacher Educator”: The Value of Working in Schools to Develop my Pedagogy of Teacher Education, Rebecca W. Burns

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Clinical Pedagogy and Pathways of Clinical Pedagogical Practice: A Conceptual Framework for Teaching About Teaching in Clinical Experiences, Rebecca W. Burns and Bernard J. Badiali

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Sharing Best Practices Among Operators and Users of Oceanographic Data: Challenge, Status, and Plans of the Ocean Best Practices Project, Mark Bushnell, Luigi Pier Buttigieg, Juliet Hermes, Emma Heslop, Johannes Karstensen, Frank Muller-Karger, Cristian M. Mas, Francoise Pearlman, Jay Pearlman, Dava L. Simpson, and Pauline Simpson

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Diamondoid Supramolecular Coordination Frameworks from Discrete Adamantanoid Platinum(II) Cages, Liping Cao, Pinpin Wang, Xiaran Miao, Yunhong Dong, Heng Wang, Honghong Duan, Yang Yu, Xiaopeng Li, and Peter J. Stang

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Changes of Ecosystem Service Value in a Coastal Zone of Zhejiang Province, China, during Rapid Urbanization, Luodan Cao, Jialin Li, Mengyao Ye, Ruiliang Pu, Yongchao Liu, Qiandong Guo, Baixiang Feng, and Xiayun Song

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Question Order and Student Understanding of Structure and Function, Kelli Patrice Carter and Luanna B Prevost

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Do Seasonal Glucocorticoid Changes Depend on Reproductive Investment? A Comparative Approach in Birds, Stefania Casagrande, László Zsolt Garamszegi, Wolfgang Goymann, Jeremy Donald, Clinton D. Francis, Matthew J. Fuxjager, Jerry F. Husak, Michele A. Johnson, Bonnie Kircher, and Lynn B. Martin

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A Nano-Silicate Material with Exceptional Capacity for CO2 Capture and Storage at Room Temperature, Leide P. Cavalcanti, Georgios N. Kalantzopoulos, Juergen Eckert, Kenneth D. Knudson, and Jon O. Fossum

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Persistence of Long-lived Memory B Cells specific to Duffy Binding Protein in Individuals Exposed to Plasmodium vivax, Siriruk Changrob, Amy M. McHenry, Myat Htut Nyunt, Jetsumon Sattabongkot, Eun-Taek Han, John H. Adams, and Patchanee Chootong

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The Association Between Lipoproteins, Disability, and Physical Function Among Older Costa Rican Adults, Marianne Chanti-Ketterl, Alyssa Gamaldo, Ross Andel, and Ronald J. Thorpe Jr.

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Physiological Role of Kvβ2 (AKR6) in Murine Skeletal Muscle Growth and Regulation, K. C. Chapalamadugu, Jared Tur, S. L. Badole, R. C. Kukreja, M. Brotto, and S. M. Tippraju

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Using Multiple Criteria Optimization and Two-Stage Genetic Algorithms to Select a Population Management Strategy with Optimized Reliability, Jessica L. Chapman, Lu Lu, and Christine M. Anderson-Cook

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Modeling the October 2005 lahars at Panabaj (Guatemala), Sylvain J. Charbonnier, Charles B. Connor, L. J. Connor, M. F. Sheridan, J. P. Oliva Hernández, and J. A. Richardson

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High-Resolution Dems of Active Volcanoes from Tandem-X Data: Implications for Flow Modeling and Hazard Assessment, Sylvain J. Charbonnier, Fanghui Deng, Timothy H. Dixon, and Rocco Malservisi

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How to Correctly Evaluate the Performance of Volcanic Mass Flow Models used for Hazard Assessment?, Sylvain J. Charbonnier, É. Macorps, Charles B. Connor, Laura J. Connor, and J. A. Richardson

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Adapting Multi-Frequency Echo-Sounders for Operation on Autonomous Vehicles, Rene Chave, Jan Buermans, David Lemon, J. Christopher Taylor, Chad Lembke, Christopher DeCollibus, Grace K. Saba, and Christian S. Reiss

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Driver Behavior Formulation in Intersection Dilemma Zones with Phone Use Distraction via a Logit-Bayesian Network Hybrid Approach, Cong Chen, Yanyan Chen, Jianming Ma, Guohui Zhang, and C. Michael Walton

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Extracting Arterial Access Density Impacts on Safety Performance Based on Clustering and Computational Analysis, Cong Chen, Qiong Wu, Guohui Zhang, Xiaoyue Cathy Liu, and Panos D. Prevedouros

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Stand Age Estimation of Rubber (Hevea brasiliensis) Plantations Using an Integrated Pixel- and Object-based Tree Growth Model and Annual Landsat Time Series, Gang Chen, Jean-Claude Thill, Sutee Anantsuksomsri, Nij Tontisirin, and Ran Tao

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Dynamic Equilibrium of Sandbar Position and Height Along a Low Wave Energy Micro-Tidal Coast, Jun Cheng and Ping Wang

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Determining Tribocorrosion Rate and Wear-Corrosion Synergy of Bulk and Thin Film Aluminum Alloys, Jia Chen, Hesham Y. Saleh Mraied, and Wenjun Cai

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The Tampa Bay Coastal Ocean Model Performance for Hurricane Irma, Jing Chen, Robert H. Weisberg, Yonggang Liu, and Lianyuan Zheng

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Delta Radiomic Features Improve Prediction for Lung Cancer Incidence: A Nested Case–Control Analysis of the National Lung Screening Trial, Dmitry Cherezov, Samuel H. Hawkins, Dmitry B. Goldgof, Lawrence O. Hall, Ying Liu, Qian Li, Yoganand Balagurunathan, Robert J. Gillies, and Matthew B. Schabath

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Correlates of Rate Heterogeneity in Avian Ecomorphological Traits, A. M. Chira, C. R. Cooney, Jen A. Bright, E. J. R. Capp, E. C. Hughes, C. J. A. Moody, L. O. Nouri, Z. K. Varley, and G. H. Thomas

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Culture Change in Nursing Homes: What Is the Role of Nursing Home Resources?, Latarsha Chisholm, Ning J. Zhang, Kathryn Hyer, Rohit Pradhan, Lynn Unruh, and Feng-Chang Lin

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Parents’ Descriptions of Young Children’s Dissociative Reactions after Trauma, Gabriela Cintron, Alison Salloum, Zoe Blair-Andrews, and Eric A. Storch

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Assessing the Direct and Indirect Effects of Food Provisioning and Nutrient Enrichment on Wildlife Infectious Disease Dynamics, David J. Civitello, Brent E. Allman, Connor Morozumi, and Jason R. Rohr

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Evaluating Blended and Flipped Instruction in Numerical Methods at Multiple Engineering Schools, Renee M. Clark, Autar Kaw, Yingyan Lou, Andrew Scott, and Mary Besterfield-Sacre

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Interactions between Various Headlands, Beaches, and Dunes along the Coast of Ceará State, Northeast Brazil, Vanda Claudino-Sales, Ping Wang, and Alexandre M. Carvalho

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Theories of Uncertainty in Illness, Margaret F. Clayton, Marleah Dean, and Merle Mishel

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A Guano‐Derived δ13C and δ15N Record of Climate since the Medieval Warm Period in North‐West Romania, Daniel M. Cleary, Bogdan P. Onac, Ioan Tanţău, Ferenc L. Forray, Jonathan G. Wynn, Monica Ionita, and Tudor Tămaş

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Magnetic Field Dependence of Nonlinear Magnetic Response and Tricritical Point in the Monoaxial Chiral Helimagnet Cr1/3NbS2, Eleanor M. Clements, Raja Das, Manh-Huong Phan, Ling Li, Veerle Keppens, David Mandrus, Michael Osofsky, and Hariharan Srikanth

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Senior Leaders and Teaching Environments: Faculty Perceptions of Administrators’ Support of Innovation, Eddie R. Cole, Amber D. Dumford, and Thomas F. Nelson Laird

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Climatology, Jennifer Collins

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The Effects of Social Connections on Evacuation Decision Making during Hurricane Irma, Jennifer Collins, Robin Ersing, Amy Polen, Michelle Saunders, and Jacob Senkbeil

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Prevalence and Correlates of Prescription Stimulant Use, Misuse, Use Disorders, and Motivations for Misuse Among Adults in the United States, Wilson M. Compton, Beth Han, Carlos Blanco, Kimberly Johnson, and Christopher M. Jones

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The Impact of Peer Support on the Risk of Future Hospital Readmissions among Older Adults with a Medical Illness and Co-Occurring Depression, Kyaien O. Conner, Tamara Cadet, Monique J. Brown, and Joshua T. Barnett

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Peer Education: Productive Engagement for Older African Americans in Recovery From Depression, Kyaien O. Conner, Amber Gum, Angela Johnson, Tamara Cadet, and Brown Charlotte

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The Geopolitics of the “Shithole”, Brian Connolly

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Using MOLASSES, A Lava Flow Simulation Code, to Interpret the Morphology of Volcanoes: Example of Olympus Mons (Mars), Charles Connor, Laura Connor, J A. Richardson, Elisabeth Gallant, and Diana Miller

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Community Strengthening and Mental Health System Linking after Flooding in Two Informal Human Settlements in Peru: A Model for Small-Scale Disaster Response, Carmen C. Contreras, M. Aguilar, B. Eappen, C. Guzmán, P. Carrasco, A. K. Millones, and Jerome T. Galea

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The GEOTRACES Intermediate Data Product 2017, ConwayGEOTRACES and Tim M. Conway

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Gulf Stream Rings as a Source of Iron to the North Atlantic Subtropical Gyre, Tim M. Conway, Jaime B. Palter, and Gregory F. de Souza

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Expanding the Scope of Universal Design: Implications for Gender Identity and Sexual Orientation, Ellyn Couillard and Jeanne L. Higbee

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Unprecedented Diversity of ssDNA Phages from the Family Microviridae Detected within the Gut of a Protochordate Model Organism (Ciona robusta), Alexandria Creasy, Karyna Rosario, and Brittany A. Leigh

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Unprecedented Diversity of ssDNA Phages from the Family Microviridae Detected within the Gut of a Protochordate Model Organism (Ciona robusta), Alexandria Creasy, Karyna Rosario, Brittany Leigh, Larry Dishaw, and Mya Breitbart

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Assessment of Maturity in the Eastern Gulf of Mexico Florida Stone Crab Menippe mercenaria Fishery, Claire E. Crowley, Ryan L. Gandy, Kendra L. Daly, and Erin H. Leone

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Tilting Directed Graphs with Tournaments, Andrzej Czygrinow, Louis Debiasio, Theodore Molla, and Andrew Treglown

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An Improved Data-Driven Approach for the Prediction of Rainfall-Triggered Soil Slides Using Downscaled Remotely Sensed Soil Moisture, Thilanki Dahigamuwa, Manjriker Gunaratne, and Mingyang Li

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Toward the Synthesis and Improved Biopotential of an N-methylated Analog of a Proline-Rich Cyclic Tetrapeptide from Marine Bacteria, Rajiv Dahiya, Suresh Kumar, Suhkbir Lal Khokra, Sheeba Varghese Gupta, Vijaykumar B. Sutariya, Deepak Bhatia, Ajay Sharma, Shamjeet Singh, and Sandeep Maharaj

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Enhanced room-temperature spin Seebeck effect in a YIG/C60/Pt layered heterostructure, R. Das, V. Kalappattil, R. Geng, H. Luong, M. Pham, T. Nguyen, Tao Liu, Mingzhong Wu, Manh-Huong Phan, and Hariharan Srikanth

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Influence of Dynamic Neuromuscular Stabilization Approach on Maximum Kayak Paddling Force, Pavel Davidek, Ross Andel, and Alena Kobesova

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Microbial Function and Hydrochemistry within a Stratified Anchialine Sinkhole: A Window into Coastal Aquifer Interactions, Madison Davis and James R. Garey

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GABAa Excitation and Synaptogenesis after Status Epilepticus – A Computational Study, Keite L. de Almeida França, Antônio-Carlos G. de Almeida, Stephen E. Saddow, Luiz E. C. Santos, Carla A. Scorza, Fulvio A. Scorza, and Antônio M. Rodrigues

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Previvors’ Uncertainty Management Strategies for Hereditary Breast and Ovarian Cancer, Marleah Dean and Lindy G. Davidson

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Exploitation of Mangrove Endophytic Fungi for Infectious Disease Drug Discovery, Danielle H. Demers, Matthew A. Knestrick, Renee Fleeman, Rahmy Tawfik, Ala Azhari, and Ashley Souza

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Digital Scholarship Services Annual Report: FY 2017-2018, Digital Scholarship Services

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Numerical Modeling of the Interactions of Oil, Marine Snow, and Riverine Sediments in the Ocean, Anusha L. Dissanayake, Adrian B. Burd, Kendra L. Daly, Simone Francis, and Uta Passow

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Genotypic Clustering does Not Imply Recent Tuberculosis Transmission in a High Prevalence Setting: A Genomic Epidemiology Study in Lima, Peru, Avika Dixit, Luca Freschi, Roger Vargas, Roger Calderon, James Sacchettini, Francis Drobniewski, Jerome Galea, Carmen Contreras, Rosa Yataco, and Zibiao Zhang

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A Kinematic Model for the Evolution of the Eastern California Shear Zone and Garlock Fault, Mojave Desert, California, Timothy H. Dixon and Surui Xie

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Evaluation of Marine Zooplankton Community Structure Through Environmental DNA Metabarcoding, Anni Djurhuus, Kathleen Pitz, Natalie Sawaya, Jaimie Rojas‐Márquez, Brianna Michaud, Enrique Montes, Frank E. Muller-Karger, and Mya Breitbart

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OFDM with Index Modulation for Asynchronous mMTC Networks, Seda Doğan, Armed Tusha, and Hüseyin Arslan

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BioTIME: A Database of Biodiversity Time Series for the Anthropocene, Maria Dornelas, Laura H. Antão, Faye Moyes, Amanda E. Bates, Anne E. Magurran, Dušan Adam, Asem A. Akhmetzhanova, Ward Appeltans, José M. Arcos, and Christopher D. Stallings

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Spectral Analysis of Seismic Noise from the 2017 Oroville Dam Crisis, Kathryn M. Dorn, Jochen Braunmiller, and Glenn Thompson

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Testing Time-Geographic Density Estimation for Home Range Analysis Using an Agent-Based Model of Animal Movement, Joni A. Downs, Mark Horner, David Lamb, Rebecca W. Loraamm, James Anderson, and Brittany Wood

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Validation of a Risk Index Model for Predicting Eastern Equine Encephalitis Virus Transmission to Horses in Florida, Joni A. Downs, Mehrdad Vaziri, Alexandra Jenkins, and Thomas R. Unnasch

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The Looming Cybersecurity Crisis and What It Means for the Practice of Industrial and Organizational Psychology, Rachel C. Dreibelbis, Jaclyn Martin, Michael D. Coovert, and David W. Dorsey

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Deciphering the State of the Late Miocene to Early Pliocene Equatorial Pacific, A. J. Drury, G. P. Lee, W. R. Gray, M. Lyle, T. Westerhold, Amelia E. Shevenell, and C. M. John

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Use of 'Eradication' in HIV Cure-Related Research: a Public Health Debate, Karine Dubé, Stuart Luter, Breanne Lesnar, Luke Newton, Jerome T. Galea, Brandon Brown, and Sarah Gianella

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Future Hydrological Alterations in the Mekong Delta under the Impact of Water Resources Development, Land Subsidence and Sea Level Rise, Thanh Duc Dang, Thomas A. Cochrane, Mauricio E. Arias, and Van Pham Dang Tri

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Passive Bristling of Mako Shark Scales in Reversing Flows, Kevin T. Du Clos, Amy Lang, Sean Devey, Philip J. Motta, María Laura Habegger, and Brad J. Gemmell

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Early-Middle Pliocene Sea-Level Elevations in the Western Mediterranean, Oana Alexandra Dumitru, Bogdan P. Onac, Victor J. Polyak, Jacqueline Austermann, Joan J. Fornos, and Yemane Asmerom

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A U-Pb Dated Glacial Isostasy Corrected Pliocene Sea-Level Record in Mallorca (Western Mediterranean) Based on Phreatic Overgrowths on Speleothems, Oana Alexandra Dumitru, Bogdan P. Onac, Victor J. Polyak, Jacqueline Austermann, Joan J. Fornós, Angel Ginés, and Yemane Asmerom

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Climate Variability in the Western Mediterranean between 121 and 67 ka Derived from a Mallorcan Speleothem Record, Oana-Alexandra Dumitru, Bogdan P. Onac, Victor J. Polyak, Jonathan G. Wynn, Yemane Asmerom, and Joan J. Fornós

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Direct Dating of Pliocene Sea-Level Stands from Western Mediterranean, Oana Alexandra Dumitru, Bogdan P. Onac, V. J. Polyak, J. Austermann, J. J. Fornós, and Y. Asmerom

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Delay Causality Network in Air Transport Systems, Wen-Bo Du, Ming-Yuan Zhang, Yu Zhang, Xian-Bin Cao, and Jun Zhang

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Comparison of the Flexible Parametric Survival Model and Cox Model in Estimating Markov Transition Probabilities using Real-World Data, Xudong Du, Mier Li, Ping Zhu, Ju Wang, Lisha Hou, Jijie Li, Hongdao Meng, Muke Zhou, and Cairong Zhou

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Preparing to Launch the ‘Thinking Healthy Programme’ Perinatal Depression Intervention in Urban Lima, Peru: Experiences from the Field, B. S. Eappen, M. Aguilar, K. Ramos, C. Contreras, M. C. Prom, P. Scorza, B. Gelaye, M. Rondon, G. Raviola, and Jerome T. Galea

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Cortical Correlates of Binaural Temporal Processing Deficits in Older Adults, Ann C. Eddins and David A. Eddins

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Water Resources Protection at the Upper Densu River Basin, Ghana: Can Rural Communities Adapt to the Ban on Galamsey?, Michael K. Eduful, Kamal A. Alsharif, and Fenda A. Akiwumi

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Big Data Analysis of Drug Induced Hypersensitivity and Anaphylaxis Reactions in Clinical Cancer Trials, Christina Eldredge, Arun Singavi, Cesar Lam, Joel Gallagher, and Jake Luo

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Twist Regions and Coefficients Stability of the Colored Jones Polynomial, Mohamed Elhamdadi, Mustafa Hajij, and Masahico Saito

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Water Quality Observations in the Marine Aquaculture Complex of the Deeba Triangle, Lake Manzala, Egyptian Mediterranean Coast, Mahmoud M. . El-Mezayen, Digna Rueda-Roa, Mohamed A. Essa, Frank Muller-Karger, and Ahmed E. Elghobashy

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The Application of Novel Research Technologies by the Deep Pelagic Nekton Dynamics of the Gulf of Mexico (DEEPEND) Consortium, David English, Chuanmin M. Hu, Chad Lembke, and Isabel C. Romero

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Kinetic Processes and Stable Isotopes in Cave Dripwaters as Indicators of Winter Severity, Vasile Ersek, Bogdan P. Onac, and Aurel Perșoiu