Green Archiving For USF Faculty: Getting Started

  1. Update your CV to include all work completed since arriving at USF.
  2. Write a short email giving us permission to post your research. We will seek copyright permission to post the digital item(s).
  3. Attach your CV and send the email to: scholarcommons@usf.edu

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If you would like to self-submit your scholarly works you can submit content here.

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Submissions from 2016

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The Great Chain of Being: Manifesto on the Problem of Agency in Science Communication, Meredith A. Johnson and Nathan Johnson

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Scholar Commons Annual Report: FY 2014-2015, Chelsea Johnston, Carol Ann Borchert, and Jason Boczar

Controller, Steven E. Jones

New Media and Modeling: Games and the Digital Humanities, Steven E. Jones

Roberto Busa, S. J., and the Emergence of Humanities Computing: The Priest and the Punched Cards, Steven E. Jones

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The Emergence of the Digital Humanities (as the Network is Everting), Steven E. Jones

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Counter Machines and Crystallographic Structures, Natasha Jonoska, Mile Krajcevski, and Gregory McColm

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Performing the ‘Two-Body Problem’: An Analysis of Academic Couples’ Career Sensemaking as Revealed Through Joint Storytelling, Jane Jorgenson

Radiomics of Lung Nodules: A Multi- Institutional Study of Robustness and Agreement of Quantitative Imaging Features, Jayashree Kalpahty-Cramer, Artem Mamomov, Binsheng Zhao, Lin Lu, Dmitry Cherezov, Sandy Napel, Sebastian Echegrary, Daniel Rubin, Michael McNitt-Gray, and Dmitry Goldgof

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A Buffer Model Account of Behavioral and ERP Patterns in the Von Restorff Paradigm, Siri-Maria Kamp, Melissa Lehman, Kenneth J. Malmberg, and Emanuel Donchin

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Communication Perspectives on a Luxury Brand Organization: The Case of Georg Jensen, Esben Karmark, Robyn Remke, Patrice M. Buzzanell, Brigid Carroll, Gail Fairhurst, Flemming Holm, and Lars Thøger Christensen

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Seascapes as a New Vernacular for Pelagic Ocean Monitoring, Management and Conservation, Maria T. Kavanaugh, Matthew J. Oliver, Francisco P. Chavez, Ricardo M. Letelier, Frank E. Muller-Karger, and Scott C. Doney

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Building a Concept Inventory for Numerical Methods: a Chronology, Autar Kaw, Yingyan Lou, Andrew Scott, and Ronald L. Miller

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Role of Deubiquitinating Enzymes in DNA Repair, Younghoon Kee and Tony T. Huang

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Using Narrative Inquiry to Understand Persistently Disciplined Middle School Students, Brianna L. Kennedy-Lewis, Amy S. Murphy, and Tanetha J. Grosland

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Molecular Mechanism of Protein Kinase Recognition and Sorting by the Hsp90 Kinome-Specific Cochaperone Cdc37, Dimitra Keramisanou, Adam Aboalroub, Ziming Zhang, Wenjun Liu, Devon Marshall, Andrea Diviney, Randy W. Larsen, Ralf Landgraf, and Ioannis Gelis

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Identification of Neuregulin-2 as a Novel Stress Granule Component, Jin Ah Kim, Aravinth K. Jayabalan, Vinoth K. Kothandan, Ramesh Mariappan, Younghoon Kee, and Takbum Ohn

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Human-Associated Bacteroides spp. and Human Polyomaviruses as Microbial Source Tracking Markers in Hawaii, Marek Kirs, Roberto A Caffaro-Filho, Mayee Wong, Valerie J. Harwood, Philip Moravcik, and Roger S Fujioka

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Research First? Assessing the Role of Special Collections Librarians in Academia, Matthew Knight and Andrew Huse

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Discriminability and Perceptual Saliency of Temporal and Spectral Cues for Final Fricative Consonant Voicing in Simulated Cochlear-Implant and Bimodal Hearing, Ying-Yee Kong, Matthew B. Winn, Katja Poelmann, and Gail S. Donaldson

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Positive Affectivity is Dampened in Youths with Histories of Major Depression and Their Never-Depressed Adolescent Siblings, Maria Kovacs, Lauren M. Bylsma, Ilya Yaroslavsky, Jonathan Rottenberg, Charles J George, Enikő Kiss, Kitti Halas, István Benák, Ildiko Baji, Ágnes Vetro, and Krisztina Kapornai

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On Fast Calculation of Addition Chains for Isogeny-Based Cryptography, Brian Koziel, Reza Azarderakhsh, David Jao, and Mehran Mozaffari Kermani

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Fast Hardware Architectures for Supersingular Isogeny Diffie-Hellman Key Exchange on FPGA, Brian Koziel, Reza Azarderakhsh, and Mehran Mozaffari Kermani

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NEON-SIDH: Efficient Implementation of Supersingular Isogeny Diffie-Hellman Key Exchange Protocol on ARM, Brian Koziel, Amir Jalali, Reza Azarderakhsh, David Jao, and Mehran Mozaffari Kermani

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Inferring Origin-Destination Pairs and Utility-Based Travel Preferences of Shared Mobility System Users in a Multi-Modal Environment, Anshuman Anjani Kumar, Jee Eun Kang, Changhyun Kwon, and Alexander Nikolaev

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Julia Programming for Operations Research: A Primer on Computing, Changhyun Kwon

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Method for Measuring the Unbinding Energy of Strongly-bound Membrane-associated Proteins, Elisa La Bauve, Briana C. Vernon, Dongmei Ye, David M. Rogers, Cathryn M. Siegrist, Bryan D. Carson, Susan B. Rempe, Aihua Zheng, Margaret Kielian, Andrew P. Shreve, and Michael S. Kent

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Knee Orthosis with Variable Stiffness and Damping that Simulates Hemiparetic Gait, Christina-Anne Lahiff, Tyagi Ramakrishnan, Seok H. Kim, and Kyle B. Reed

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Encrustation of Inarticulate Brachiopods on Scaphitid Ammonites and Inoceramid Bivalves from the Upper Cretaceous U. S. Western Interior, Neil H. Landman, Joshua S. Slattery, and Peter J. Harries

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Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species, Stephanie N. Lawler, Christina A Kellogg, Scott C. France, Rachel W. Clostio, Sandra D. Brooke, and Steve W. Ross

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Generation of Germ-Free /Ciona intestinalis for Studies of Gut-Microbe Interactions, Brittany A Leigh, Assunta Liberti, and Larry J Dishaw

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High Prevalence of Chlamydia Trachomatis and Neisseria Gonorrhoeae Infections in Anal and Pharyngeal Sites Among a Community-Based Sample of Men Who Have Sex with Men and Transgender Women in Lima, Peru, Segundo R. Leon, Eddy R. Segura, Kelika A. Konda, Juan A. Flores, Alfonso Silva-Santisteban, Jerome T. Galea, Thomas J. Coates, Jeffrey D. Klausner, and Carlos F. Caceres

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New URJC-1 Material with Remarkable Stability and Acid-Base Catalytic Properties, Pedro Leo, Ferdnando Martinez, Guillermo Calleja, David Briones, and Lukasz Wojtas

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Toward a Pan-cultural Typology of Deception Motives, Timothy R. Levine, Mohamed Vaqas Ali, Marleah Dean, Rasha A. Abdulla, and Karina Garcia-Ruano

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Response of Wetland Soil Carbon to Groundwater Conservation: Probabilistic Outcomes from Error Propagation, David B. Lewis

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Creation of a New Type of Ion Exchange Material for Rapid, High-capacity, Reversible and Selective Ion Exchange without Swelling and Entrainment, Baiyan Li, Yiming Zhang, Dingxuan Ma, Zhenyu Xing, Tianliang Ma, Zhan Shi, Xiulei Ji, and Shengqian Ma

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Processing of Individual Items during Ensemble Coding of Facial Expressions, Huiyun Li, Luyan Ji, Ke Tong, Naixin Ren, Wenfeng Chen, Chang Hong Liu, and Xiaolan Fu

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Rube Goldberg Salad System: Teaching Systems Theory in Communication, Jasmine R. Linabary, Ziyu Long, Ashton Mouton, Ranjani L. Rao, and Patrice M. Buzzanell

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Video-Based 3D Reconstruction, Laparoscope Localization and Deformation Recovery for Abdominal Minimally Invasive Surgery: A Survey, Bingxiong Lin, Yu Sun, Xiaoning Qian, Dmitry Goldgof, Richard D. Gitlin, and Yuncheng You

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Crystal Structure of Ethyl 4-[(E)-(4-hy-droxy-3-meth-oxy-benzyl-idene)amino]-benzoate: a p-hy-droxy Schiff Base, Jing Ling, Padmini Kavuru, Lukasz Wojtas, and Keith Chadwick

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Danger Alert: Mitigating Wrong-Way Driving through Red RRFB Implementation, Pei-Sung Lin and Seckin Ozkul

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Evaluation on the Perceived Effectiveness of Red RRFB Configurations to Reduce Wrong-Way Driving, Pei-Sung Lin, Seckin Ozkul, and Chester Chandler III

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Impact of Connected Vehicles and Autonomous Vehicles on Future Transportation, Pei-Sung Lin, Zhenyu Wang, and Rui Guo

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A Pilot Study on Interactions between Drivers and Pedestrian Features at Signalized Intersections-Using the SHRP2 Naturalistic Driving Study Data, Pei-Sung Lin, Zhenyu Wang, Rui Guo, and Achilleas Kourtellis

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Thin InSb Layers with Metallic Gratings: A Novel Platform for Spectrally-Selective THz Plasmonic Sensing, Shuai Lin, Khagendra Bhattarai, Jiangfeng Zhou, and Diyar Talbayev

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Task-Oriented Grasp Planning Based on Disturbance Distribution, Yun Lin and Yu Sun

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Scaling Law for Electrocaloric Temperature Change in Antiferroelectrics, Sergey Lisenkov, B. K. Mani, E. Glazkova, C. W. Miller, and Inna Ponomareva

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Ultrafiltration and Microarray for Detection of Microbial Source Tracking Marker and Pathogen Genes in Riverine and Marine Systems, Xiang Li, Valerie J. Harwood, Bina Nayak, and Jennifer L Weidhaas

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Synchronicity between Ice Retreat and Phytoplankton Bloom in Circum‐Antarctic Polynyas, Yun Li, Rubao Ji, Meibing Jin, and Julienne Stroeve

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Positioning Work Amid Discontinuities and Continuities: Chinese Post80s Workers’ Dialogical Constructions of Meanings of Work, Ziyu Long, Patrice M. Buzzanell, and Kai Kuang

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Enhanced Nutrient Management of Stormwater through a Field Demonstration of Nitrogen Removal in a Modified Bioretention System, Emma V. Lopez, Thomas J. Lynn, Mackenzie Peterson, Sarina Ergas, Maya A. Trotz, and James Mihelcic

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Intramolecular 1,5-C(Sp3)–H Radical Amination via Co(II)-Based Metalloradical Catalysis for Five-Membered Cyclic Sulfamides, Hongjian Lu, Kai Lang, Huiling Jiang, Lukasz Wojtas, and X Peter Zhang

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TiO2-Based Nanomaterials for Advanced Environmental and Energy-Related Applications, Xujie Lü, Baoyu Xia, Yefeng Yang, and Hao Tang

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Sunlight Induced Chlorophyll fluorescence in the Near-Infrared Spectral Region in Natural Waters: Interpretations of the Narrow Reflectance Peak around 761nm, Yingcheng Lu, Linhai Li, Minwei Zhang, Shaojie Sun, and Chunguang Lv

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Unique Correlates of Heart Failure and Cancer Caregiver Satisfaction With Hospice Care, Meredith A. MacKenzie, Harleah G. Buck, Salimah H. Meghani, and Barbara Riegel

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Eigenstress Model for Electrochemistry of Solid Surfaces, Hongxin Ma, Xilin Xiong, Panpan Gao, Xi Li, Yu Yan, Alex A. Volinsky, and Yanjing Su

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Thermal Comfort and Perception Inside Air-Conditioned Areas, Ahmad Manasrah, Rasim O. Guldiken, and Kyle B. Reed

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Context and the Advancement of a Global Science of Human Development: A Commentary, Kofi Marfo

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Purposeful Entanglements: A New Materialist Analysis of Transformative Interviews, Travis M. Marn and Jennifer R. Wolgemuth

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Structural and Activity Characterization of Human PHPT1 after Oxidative Modification, Daniel R. Martin, Priyanka Dutta, Shikha Mahajan, Sameer Varma, and Stanley M. Stevens Jr.

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Activating Clinical Trials: A Process Improvement Approach, Diego Martinez, Athanasios Tsalatsanis, Ali Yalcin, José L. Zayas-Castro, and Benjamin Djulbegovic

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Restricted Mobility of Specific Functional Groups Reduces Anti-cancer Drug Activity in Healthy Cells, Murillo L. Martins, Rosanna Ignazzi, Juergen Eckert, Benjamin Watts, Ramon Kaneno, Willian F Zambuzzi, Luke Daemen, Margarida J Saeki, and Heloisa N Bordallo

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COMT and OPRM1 Genotype Associations with Daily Knee Pain Variability and Activity Induced Pain, Lynn M. Martire, Stephanie J. Wilson, Brent J. Small, Yvette P. Conley, Piotr K. Janicki, and Martin J. Sliwinski

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Digital Storytelling as Racial Justice: Digital Hopes for Deconstructing Whiteness in Teacher Education, Cheryl E. Matias and Tanetha J. Grosland

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Factors Associated with Married Women’s Support of Male Circumcision for HIV Prevention in Uganda: A Population Based Cross–Sectional Study, Komi Mati, Korede K. Adegoke, and Hamisu M. Salihu

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Random Walks in a Sparse Random Environment, Anastasios Matzavinos, Alexander Roitershtein, and Youngsoo Seol

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Attention Demands of Language Production in Adults Who Stutter, Nathan D. Maxfield, Wendy L. Olsen, Daniel Kleinman, Stefan A. Frisch, Victor S. Ferreira, and Jennifer J. Lister

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Fear Conditioning and Extinction in Youth with Obsessive-compulsive Disorder, Joseph F. McGuire, Scott P. Orr, Monica S. Wu, Adam B. Lewin, Brent J. Small, Vicky Phares, Tanya K. Murphy, Sabine Wilhelm, Daniel S. Pine, Daniel Geller, and Eric A. Storch

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Inactivation of Peptidylglycine α-hydroxylating Monooxygenase by Cinnamic Acid Analogs, Neil R. McIntyre, Edward W. Lowe Jr, Matthew R. Battistini, James W. Leahy, and David J. Merkler

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Association between Sexual Role and HIV Status Among Peruvian Men Who Have Sex with Men Seeking an HIV Test: A Cross-Sectional Analysis, Sarah A. McLean, Jerome T. Galea, Holly J. Prudden, Gino Calvo, Hugo Sánchez, and Brandon Brown

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Planning for climate change: The Need for Mechanistic Systems-based Approaches to Study Climate Change Impacts on Diarrheal Diseases, Jonathan E. Mellor, Karen Levy, Julie Zimmerman, Mark Elliott, Jamie Bartram, Elizabeth Carlton, Thomas Clasen, Rebecca Dilingham, Joseph Eisenberg, Richard Guerrant, Daniele Lantagne, James Mihelcic, and Kara Nelson

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Assessing the Role of Preknowledge in Force Compensation during a Tracking Task, Dimitrios Menychtas, Tyler Sullins, Benjamin Rigsby, Stephanie Carey, and Kyle B. Reed

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Identification of Ecdysone Hormone Receptor Agonists as a Therapeutic Approach for Treating Filarial Infections, Amruta S Mhashilkar, Sai L Vankayala, Canhui Liu, Fiona Kearns, Priyanka Mehrotra, George Tzertzinis, Subba R Palli, H. Lee Woodcock III, and Thomas R Unnasch

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Source Apportionment of Wet-Deposited Atmospheric Mercury in Tampa, Florida, Ryan Michael, Amy L. Stuart, Maya Trotz, and Fenda Akiwumi

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Dielectric Analysis of Aqueous Poly(l-glutamic acid) and Poly-l-(glutamic acid4, Tyrosine1) Solutions at High Frequencies from Capacitance Measurements, Jorge Monreal, Tatiana Eggers, and Manh-Huong Phan

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Global Regulator of Virulence A (GrvA) Coordinates Expression of Discrete Pathogenic Mechanisms in Enterohemorrhagic Escherichia coli through Interactions with GadW-GadE, Jason K. Morgan, Ronan K. Carroll, Carly M. Harro, Khoury W Vendura, Lindsey N. Shaw, and James T. Riordan

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Modeling the Influence of Various Water Stressors on Regional Water Supply Infrastructures and their Embodied Energy, Weiwei Mo and Qiong Zhang

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Lightweight Hardware Architectures for Fault Diagnosis Schemes of Efficiently-Maskable Cryptographic Substitution Boxes, Mehran Mozaffari Kermani and Reza Azarderakhsh

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Multidisciplinary Approaches and Challenges in Integrating Emerging Medical Devices Security Research and Education, Mehran Mozaffari Kermani, Reza Azarderakhsh, and Mehdi Mirakhorli

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Error Detection Reliable Architectures of Camellia Block Cipher Applicable to Different Variants of Its Substitution Boxes, Mehran Mozaffari Kermani, Reza Azarderakhsh, and Jiafeng Xie

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Efficient Error Detection Architectures for CORDIC through Recomputing with Encoded Operands, Mehran Mozaffari Kermani, Rajkuma Ramadoss, and Reza Azarderakhsh

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A Compilation of Global Bio-optical in Situ Data for Ocean-colour Satellite Applications, Frank Muller-Karger

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Sputtering Power Effects on Growth and Mechanical Properties of Cr2AlC MAX Phase Coatings, Muhammad Naveed, Aleksei Obrosov, Andrzej Zak, Wlodzimierz Dudzinski, Alex A. Volinsky, and Sabine Weiß

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Impact of Vapor Polishing on Surface Roughness and Mechanical Properties for 3D Printed ABS, Clayton Neff, Matthew Trapuzzano, and Nathan B. Crane

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Characteristics and Predictors of Fatigue Among Men Receiving Androgen Deprivation Therapy for Prostate Cancer: A Controlled Comparison, Ashley M. Nelson, Brian D. Gonzalez, Heather S.L. Jim, Julie M. Cessna, Steven K. Sutton, Brent J. Small, Mayer N. Fishman, Babu Zachariah, and Paul B. Jacobsen

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Digital Manufacturing and Performance Testing for Military Grade Application Specific Electronic Packaging (ASEP), C. Mike Newton, Paul I. Deffenbaugh, Kenneth H. Church, and Nathan B. Crane

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Open-Loop Electrowetting Actuation with Micro-Stepping, Qi Ni, Daniel E. Capecci, and Nathan B. Crane

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Robust Bidirectional Continuous Electrowetting Based on Metal–Semiconductor (M–S) Diodes, Qi Ni, Daniel E. Capecci, Millicent Schlafly, and Nathan B. Crane

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‘My Holocaust Experience was Great!’: Entitlements for Participation in Museum Media, Chaim Noy

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Evaluation of Processing Variables in Large Area Polymer Sintering of Single Layer Components, Justin Nussbaum, Garrett Craft, Julie Harmon, and Nathan B. Crane

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Acquired and Transmitted Multidrug Resistant Tuberculosis: the Role of Social Determinants, Anna Odone, Roger Calderon, Mercedes C. Becerra, Zibiao Zhang, Carmen C. Contreras, Rosa Yataco, Jerome T. Galea, Leonid Lecca, Matthew H. Bonds, Carole D. Mitnick, and Megan B. Murray

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Assessment of changes in riverine nitrate in the Sesan, Srepok and Sekong tributaries of the Lower Mekong River Basin, Chanta Oeurng, Thomas A. Cochrane, Mauricio E. Arias, Bikesh Shrestha, and Thanapon Piman

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The Role of Continuous Low-frequency Harmonicity Cues for Interrupted Speech Perception in Bimodal Hearing, Soo Hee Oh and Gail S. Donaldson

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Effect of a Knowledge-Based and Skills-Based Programme for Physicians on Risk of Sexually Transmitted Reinfections Among High-Risk Patients in China: a Cluster Randomised Trial, Don Operario, Debin Wang, Nickolas D. Zaller, Mei-Fen Yang, Kathleen Blaney, Jing Cheng, Qian Hong, Hongbo Zhang, Jing Chai, Gregory Szekeres, Jerome T. Galea, and Thomas J. Coates

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“There Are No Known Benefits...”: Considering the Risk/Benefit Ratio of Qualitative Research, Tara Opsal, Jennifer R. Wolgemuth, Jennifer Cross, Tanya Kaanta, Ellyn Dickmann, Soria Colomer, and Zeynep Erdil-Moody

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User Involvement in the Partner Program of the Educational Social Network, Ilya V. Osipov, Alex A. Volinsky, and Anna Y. Praskikova

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The Effects of Sensorineural Hearing Impairment on Asynchronous Glimpsing of Speech, Erol J. Ozmeral, Emily Buss, and Joseph W. Hall III

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Large Cross-Sectional Study of Presbycusis Reveals Rapid Progressive Decline in Auditory Temporal Acuity, Erol J. Ozmeral, Ann C. Eddins, Robert Frisina Sr., and David A. Eddins

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Respiratory Sinus Arrhythmia Reactivity to a Sad Film Predicts Depression Symptom Improvement and Symptomatic Trajectory, Vanessa Panaite, Alexandra Cowden Hindash, Lauren M. Bylsma, Brent J. Small, Kristen Salomon, and Johnathan Rottenberg

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A Fossilized Energy Distribution of Lightning, Matthew A. Pasek and Marc Hurst