This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2007

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Colored Dissolved Organic Matter in Tampa Bay, Florida, Z. Chen, C. Hu, R. N. Conmy, Frank E. Muller-Karger, and P. Swarzenski

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Monitoring Turbidity in Tampa Bay Using Modis/Aqua 250-M Imagery, Z. Chen, C. Hu, and Frank E. Muller-Karger

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Remote Sensing of Water Clarity in Tampa Bay, Z. Chen, Frank E. Muller-Karger, and C. Hu

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Anomalous Features Observed on Tests of Live Archaiasine Foraminifers from the Florida Keys, USA, Heidi Crevison and Pamela Hallock

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Chapter 9 Zooplankton Processes in Arctic and Antarctic Polynyas, D. Deibel and Kendra L. Daly

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Reconstructing Twentieth-Century Sea Surface Temperature Variability in the Southwest Pacific: A Replication Study Using Multiple Coral Sr/Ca Records from New Caledonia, Kristine L. DeLong, Terrence M. Quinn, and Frederick W. Taylor

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Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil, Noah Fierer, Mya Breitbart, James Nulton, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, and Robert Jackson

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Lesion Regeneration Rates in Reef-Building Corals Montastraea spp. as Indicators of Colony Condition, Elizabeth M. Fisher, John E. Fauth, Pamela Hallock-Muller, and Cheryl M. Woodley

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Satellite-Derived Surface Current Divergence in Relation to Tropical Atlantic SST and Wind, Robert W. Helber, Robert H. Weisberg, Fabrice Bonjean, Eric S. Johnson, and Gary S. Lagerloef

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Response of Sea Surface Properties to Hurricane Dennis in the Eastern Gulf of Mexico, C. Hu and Frank E. Muller-Karger

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Developing Standards for Dissolved Iron in Seawater, Kenneth Johnson, Virginia Elrod, Steve Fitzwater, Joshua Plant, Edward Boyle, Bridget Bergquist, and Kristen N. Buck

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Power Law Rank–abundance Models for Marine Phage Communities, Karl Heinz Karl, Beltran Rodriguez-Brito, Mya Breitbart, David Bangor, Florent Angly, Ben Felts, James Nulton, Forest Rohwer, and Peter Salamon

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Euphotic Zone Depth: Its Derivation and Implication to Ocean-Color Remote Sensing, ZhongPing Lee, Alan Weidemann, John Kindle, Robert Arnone, Kendall L. Carder, and Curtiss Davis

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Rectification of the Bias in the Wavelet Power Spectrum, Yonggang Liu, X. San Liang, and Robert H. Weisberg

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Ocean Currents and Sea Surface Heights Estimated Across the West Florida Shelf, Yonggang Liu and Robert H. Weisberg

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Current Patterns on the West Florida Shelf from Joint Self-Organizing Map Analyses of Hf Radar and Adcp Data, Yonggang Liu, Robert H. Weisberg, and Lynn K. Shay

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Nummulites, A. R. Loeblich Jr. and Pamela Hallock

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Macroarray Analysis of Gene Expression in a Marine Pseudotemperate Bacteriophage, Amy Long, Stacey S. Patterson, and John H. Paul

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Water Level Observations for Storm Surge, Mark E. Luther, Clifford Ronald Merz, Jeffrey Scudder, Stephen R. Baig, Jennifer Pralgo, Stephen Gill, and Gerald Hovis

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On the Attraction of Larval Fishes to Reef Sounds, David A. Mann, Brandon M. Casper, Kelly S. Boyle, and Timothy C. Tricas

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Modern Climate Forcing of Terrigenous Deposition in the Tropics (Cariaco Basin, Venezuela), N. C. Martinez, R. W. Murray, R. C. Thunell, L. C. Peterson, Frank E. Muller-Karger, Y. Astor, and R. Varela

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Velocity Comparisons from Upward and Downward Acoustic Doppler Current Profilers on the West Florida Shelf, Dennis A. Mayer, Jyotika I. Virmani, and Robert H. Weisberg

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Development of a Self-Contained, Satellite Based, Moored Surface Buoy Position Tracking Device, Clifford R. Merz, Robert H. Weisberg, Patrick A. Smith, Jason A. Law, Jeff Donovan, Graham M. Tilbury, Chad Lembke, and Douglass Myhre

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A Numerical Simulation of Residual Circulation in Tampa Bay. Part I: Low-frequency Temporal Variations, Steven D. Meyers, Mark E. Luther, Monica Wison, Heather Havens, Amanda Linville, and Kristin Sopkin

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Effect of Shoreline Meteorological Measurements on NOAA Buoy Model Prediction of Coastal Air–Sea Gas Transfer, Connie Mizak, Scott Campbell, Kristin Sopkin, Sherryl Gilbert, Mark E. Luther, and Noreen Poor

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Comment on “Estimating Future Sea Level Change from Past Records” by Nils-Axel Mörner, R. S. Nerem, A. Cazenave, Don Chambers, L. Fu, E. W. Leuliette, and Gary T. Mitchum

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On the Absorption of Light in the Orinoco River Plume, A. L. Odriozola, R. Varela, C. Hu, Y. Astor, Laura Lorenzoni, and Frank E. Muller-Karger

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Baroclinic Tidal Flows and Inundation Processes in Cook Inlet, Alaska: Numerical Modeling and Satellite Observations, L. Y. Oey, T. Ezer, C. Hu, and Frank E. Muller-Karger

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Changes in Coral-Reef Structure through the Miocene in the Mediterranean Province: Adaptive Versus Environmental Influence, Luis Pomar and Pamela Hallock

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Top-Down Control of Phytoplankton by Oysters in Chesapeake Bay, USA: Reply to Newell et al. (2007), Lawrence R. Pomeroy, Christopher F. D'Elia, and Linda C. Schaffner

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Roundtable Discussion Groups Summary Papers: Environmental Bio-Indicators in Coral Reef Ecosystems: the Need to Align Research, Monitoring, and Environmental Regulation, Paul W. Sammarco, Pamela Hallock, Judith C. Lang, and Richard S. LeGore

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Progressive Dolomitization of Florida Limestone Recorded by Alkaline Earth Element Concentrations in Saline, Geothermal, Submarine Springs, Johan Schijf and Robert H. Byrne

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Validating a Biogeochemical Watershed Disturbance and Climate Change Proxy: Tampa Bay. FL, Patrick Schwing, E. Martinez, A. J. Pyrtle, and S. Haynes

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High-Frequency Radar Mapping of Surface Currents Using Wera, Lynn K. Shay, Jorge Martinez-Pedraja, Thomas M. Cook, Brian K. Haus, and Robert H. Weisberg

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Upper Ocean Response of the Mesoamerican Barrier Reef System to Hurricane Mitch and Coastal Freshwater Inputs: A Study Using Sea-Viewing Wide Field-Of-View Sensor (SEAWIFS) Ocean Color Data and a Nested-Grid Ocean Circulation Model, Jinyu Sheng, Liang Wang, Serge Andrefouet, Chuanmin Hu, Bruce G. Hatcher, Frank E. Muller-Karger, Bjoern Kjerfve, William D. Heyman, and Bo Yang

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Cenozoic Antarctic Cryosphere Evolution: Tales from Deep-Sea Sedimentary Records, Amelia E. Shevenell

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Orbital and Atmospheric Forcing of Western Antarctic Peninsula Climate in the Holocene: The TEX86 Paleotemperature Record of Palmer Deep, Amelia E. Shevenell, A. E. Ingalls, and E. W. Domack

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Modeling Air/Sea Flux Parameters in a Coastal Area: A Comparative Study of Results from the TOGA COARE Model and the NOAA Buoy Model, Kristin Sopkin, Connie Mizak, Sherryl Gilbert, Vembu Subramaniam, Mark E. Luther, and Noreen Poor

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Improvements in Data Management Practices Within West Florida Shelf Coastal Ocean Monitoring and Prediction System, Vembu Subramaniam, Jeff Donovan, Jeremy Atkins, Mark E. Luther, and Robert H. Weisberg

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The Oxygen Isotope Composition of Planktonic Foraminifera from the Cariaco Basin, Venezuela: Seasonal and Interannual Variations, K. Tedesco, R. Thunell, Y. Astor, and Frank E. Muller-Karger

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Particulate Organic Carbon Fluxes Along Upwelling-Dominated Continental Margins: Rates and Mechanisms, Robert C. Thunell, Claudia Benitez-Nelson, Ramon Varela, Yrene Astor, and Frank E. Muller-Karger

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The Physiology of Autumn and Winter Krill (Euphausia superba) in the Waters of the Western Antarctic Peninsula Shelf, Joseph J. Torres, Kendra L. Daly, H. R. Harvey, Se-Jong Ju, Langdon B. Quetin, Robin M. Ross, and Scott M. Gallager

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A High Resolution Satellite-only GRACE-based Mean Dynamic Topography of the South Atlantic Ocean, Marcio L. Vianna, Viviane V. Menezes, and D. Chambers

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An Optical Model for Heat and Salt Budget Estimation for Shallow Seas, Hari Warrior and Kendall L. Carder

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Remote Sensing of Particle Backscattering in Chesapeake Bay: a 6-Year Seawifs Retrospective View, D. G. Zawada, C. Hu, T. Clayton, Z. Chen, J. C. Brock, and Frank E. Muller-Karger

Submissions from 2006

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The Marine Viromes of Four Oceanic Regions, Florent Angly, Ben Felts, Mya Breitbart, Peter Salamon, Robert Edwards, Craig Carlson, Amy Chan, Matthew Haynes, Scott Kelley, Hong Liu, Joseph Mahaffy, Jennifer Mueller, James Nulton, Robert Olson, Rachel Parsons, Steve Rayhawk, Curtis Suttle, and Forest Rohwer

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Cold Event in the South Atlantic Bight During Summer of 2003: Anomalous Hydrographic and Atmospheric Conditions, Alfredo Aretxabaleta, James R. Nelson, Jack O. Blanton, Harvey E. Seim, Francisco E. Werner, John M. Bane, and Robert H. Weisberg

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Seasonal Variability in the Hydrological and Chemical Structure of the Suboxic Waters at the Cariaco Time-Series Station, Y. M. Astor, M. Scranton, L. Guzmán, R. Thunell, Frank E. Muller-Karger, G. Taylor, Kent Fanning, and R. Varela

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Widespread Occurrence of Phage-encoded Exotoxin Genes in Terrestrial and Aquatic Environments in Southern California, Veronica Casas, Jon Miyake, Heather Balsley, Julie Roark, Serena Telles, Steven Leeds, Ivan Zurita, Mya Breitbart, Doug Bartlett, Farooq Azam, and Forest Rohwer

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Evaluation of New GRACE Time-variable Gravity Data over the Ocean, Don P. Chambers

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Observing seasonal Steric Sea Level Variations with GRACE and Satellite Altimetry, Don P. Chambers

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Sediment Cores from the Florida Keys (USA): Is Resolution Sufficient for Environmental Applications?, H. L. Crevison, Gil McRae, and Pamela Hallock

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The OOI Design and Implementation Workshop Report, Kendra L. Daly, Richard Jahnke, Mark Moline, Robert Detrick, Doug Luther, George Matsumoto, Larry Mayer, and Keith Raybould

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Investigating Coral Reef Degradation at Alina's Reef in the Florida Keys: Cellular Physiology of White Grunt (Haemulon plumieri) as a Biological Indicator, C. A. Downs, J. E. Fauth, Pamela Hallock, J. F. Halas, J. C. Halas, R. Curry, and C. M. Woodley

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Using Pyrosequencing to Shed Light on Deep Mine Microbial Ecology, Robert Edwards, Beltran Rodriguez-Brito, Linda Wegley, Matthew Haynes, Mya Breitbart, Dean Peterson, Martin Saar, Scott Alexander, E. Calvin Alexander Jr., and Forest Rohwer

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Changes in Wind-Driven Upwelling during the Last Three Centuries: Interocean Teleconnections, M. A. Goni, R. C. Thunell, M. P. Woodwort, and Frank E. Muller-Karger

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Larger Benthic Foraminifers of the Marion Plateau, Northeastern Australia (Odp Leg 194): Comparison of Faunas from Bryozoan (Sites 1193 and 1194) and Red Algal (Sites 1196-1198) Dominated Carbonate Platforms, Pamela Hallock, Kathryn Sheps, George Chaproniere, and Mihcael Howell

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Bleaching in Foraminifera with Algal Sybionts: Implications for Reed Monitoring and Risk Assessment, Pamela Hallock, D. E. Williams, E. M. Fisher, and S. K. Toler

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Bleaching in Reef-dwelling Foraminifers: Implications for Reef Decline, Pamela Hallock, D. E. Williams, S. K. Toler, E. M. Fisher, and H. K. Talge

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Laurentide Ice Sheet Meltwater and Abrupt Climate Change During the Last Glaciation, Heather W. Hill, Benjamin P. Flower, Terrence M. Quinn, David J. Hollander, and Thomas P. Guilderson

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Hurricanes, Submarine Groundwater Discharge, and Florida'S Red Tides, C. Hu, Frank E. Muller-Karger, and P. W. Swarzenski

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Gene Diversity and Organization in rbcL-Containing Genome Fragments from Uncultivated Synechococcus in the Gulf of Mexico, David E. John, Boris Wawrik, F. Robert Tabita, and John H. Paul

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Role of Elevated Organic Carbon Levels and Microbial Activity in Coral Mortality, David Kline, Neilan Kuntz, Mya Breitbart, Nancy Knowlton, and Forest Rohwer

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Sea Surface Temperature Patterns on the West Florida Shelf Using Growing Hierarchical Self-Organizing Maps, Yonggang Liu, Robert H. Weisberg, and Ruoying He

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Performance Evaluation of the Self-Organizing Map for Feature Extraction, Yonggang Liu, Robert H. Weisberg, and Christopher N. K. Mooers

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Subcentennial-Scale Climatic and Hydrologic Variability in the Gulf of Mexico During the Early Holocene, Jenna M. LoDico, Benjamin P. Flower, and Terrence M. Quinn

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Iron Cycling Within the Columbia River Plume: The Role of Tidal Mixing and Upwelling, M. C. Lohan, Kristen N. Buck, C. J. Berger, A. M. Aguilar-Islas, B. Sohst, G. J. Smith, and K. W. Bruland

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Validation of SeaWiFS Chlorophyll a Concentrations in the Southern Ocean: A Revisit, Marina Marrari, Kendra L. Daly, and Chuanmin Hu

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Temperate and Lytic Cyanophages from the Gulf of Mexico, Lauren D. McDaniel, Michele delaRosa, and John H. Paul

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A Natural Laboratory to Study Arsenic Geobiocomplexity, Thomas Pichler, Jan P. Amend, James R. Garey, Pamela Hallock, Nancy P. Hasia, David J. Karlen, D'Arcy R. Meyer-Dombard, Bryan J. McCloskey, and Roy E. Price

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Limits to Top-Down Control of Phytoplankton by Oysters in Chesapeake Bay, Lawrence R. Pomeroy, Christopher F. D'Elia, and Linda C. Schaffner

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Coral-Based Climate Variability in the Western Pacific Warm Pool since 1867, Terrence M. Quinn, Frederick W. Taylor, and Thomas J. Crowley

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Global Ocean Warming and Sea Level Rise, D. Roemmich, J. Willis, J. Gilson, D. Stammer, A. Koehl, T. Yemenis, Don P. Chambers, Felix Landerer, Jochem Marotzke, Jonathan Gregory, Tatsuo Suzuki, John Church, Neil White, Catia Domingues, Anny Cazenave, and Pierre-Yves Letraon

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Feeding Ecology and Metabolism of the Antarctic Cydippid Ctenophore Callianira Antarctica, Kerri M. Scolardi, Kendra L. Daly, Evgeny A. Pakhomov, and Joseph J. Torres

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Modelling of Wind Wave‐induced Bottom Processes during the Slack Water Periods in Tampa Bay, Florida, John Z. Shi, Mark E. Luther, and Steven D. Meyers

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Detection and Quantification of Chemical Plumes Using a Portable Underwater Membrane Introduction Mass Spectrometer, Robert T. Short, Susan K. Toler, Gottfried P. G. Kibelka, Digna Rueda Roa, R. J. Bell, and Robert H. Byrne

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Reproducibility of Geochemical and Climatic Signals in the Atlantic Coral Montastraea Faveolata, Jennifer M. Smith, Terrence M. Quinn, Kevin P. Helmle, and Robert B. Halley

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The 2005 Hurricane Season: an Echo of the Past or a Harbinger of the Future?, Jyotika I. Virmani and Robert H. Weisberg

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The 2005 Hurricane Season: An Echo of the Past or a Harbinger of the Future?, Jyotika I. Virmani and Robert H. Weisberg

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Red Tides in the Gulf of Mexico: Where, When, and Why?, John J. Walsh, J. K. Jolliff, B. P. Darrow, J. M. Lenes, S. P. Milroy, A. Remsen, D. A. Dieterle, Kendall L. Carder, F. R. Chen, Gabriel A. Vargo, Robert H. Weisberg, Kent A. Fanning, Eugene Shinn, K. A. Steidinger, Cynthia A. Heil, C. R. Tomas, J. S. Prospero, T. N. Lee, G. J. Kirkpatrick, T. E. Whitledge, D. A. Stockwell, T. A. Villareal, A. E. Jochens, P. S. Bontempi, and Frank E. Muller-Karger

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A Simulation of the Hurricane Charley Storm Surge and its Breach of North Captiva Island, Robert H. Weisberg and Lianyuan Zheng

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Circulation of Tampa Bay Driven by Buoyancy, Tides, and Winds, as Simulated Using a Finite Volume Coastal Ocean Model, Robert H. Weisberg and Lianyuan Zheng

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Hurricane Storm Surge Simulations for Tampa Bay, Robert H. Weisberg and Lianyuan Zheng

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Changes in the Circulation of Tampa Bay Due to Hurricane Frances as Recorded by ADCP Measurements and Reproduced with a Numerical Ocean Model, M. Wilson, S. D. Meyers, and Mark E. Luther

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FastGroupII: A Web-based Bioinformatics Platform for Analyses of Large 16S rDNA Libraries, Yanan Yu, Mya Breitbart, Pat McNairnie, and Forest Rohwer

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Bridging between Seawifs and Modis for Continuity of Chlorophyll-A Concentration Assessments Off Southeastern China, Mingrui Zhang, C. Hu, S. Shang, Frank E. Muller-Karger, Y. Li, M. Dai, B. Huang, X. Ning, and H. Hong

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RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses, Tao Zhang, Mya Breitbart, Wah Heng Lee, Jin-Quan Run, Chia Lin Wei, Shirlena Wee Ling Soh, Martin Hibberd, Edison Liu, Forest Rohwer, and Yijun Ruan

Submissions from 2005

Multi-Scale Remote Sensing of Coral Reefs, S. Andréfouët, E. J. Hochberg, C. Chevillon, Frank E. Muller-Karger, J. C. Brock, and C. Hu

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PHACCS, An Online Tool for Estimating the Structure and Diversity of Uncultured Viral Communities Using Metagenomic Information, Florent Angly, Beltran Rodriguez-Brito, David Bangor, Patrick McNairnie, Mya Breitbart, Peter Salamon, Ben Felts, James Nulton, Joseph Mahaffy, and Forest Rohwer

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Interannual and Decadal Variability of the Western Pacific Sea Surface Condition for the Years 1787-2000: Reconstruction Based on Stable Isotope Record from a Guam Coral, Ryuji Asami, Tsutomu Yamada, Yasufumi Iryu, Terrence M. Quinn, Christopher P. Meyer, and Gustav Paulay

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Fco2 Variability at the Cariaco Tropical Coastal Upwelling Time Series Station, Y. M. Astor, M. I. Scranton, Frank E. Muller-Karger, R. Bohrer, and J. García

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Eddy Forced Variations in On-And Off-Margin Summertime Circulation along the 1000-M Isobath of the Northern Gulf of Mexico, 2000-2003, and Links with Sperm Whale Distributions along the Middle Slope, D. C. Biggs, A. E. Jochens, M. K. Howard, S. F. Dimarco, K. D. Mullin, R. R. Leben, Frank E. Muller-Karger, and Chuanmin Hu

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Microbial Communities Associated with Skeletal Tumors on Porites compressa, Mya Breitbart, Ranjeet Bhagooli, Sean Griffin, Ian Johnston, and Forest Rohwer

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Phage Ecology and Bacterial Pathogenesis, Mya Breitbart, F. Rohwer, and S. T. Abedon

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Here a Virus, There a Virus, Everywhere the Same Virus?, Mya Breitbart and Forest Rohwer

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Method for Discovering Novel DNA Viruses in Blood Using Viral Particle Selection and Shotgun Sequencing, Mya Breitbart and Forest Rohwer

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Copper Speciation in San Francisco Bay: A Novel Approach Using Multiple Analytical Windows, Kristen N. Buck and Kenneth W. Bruland

Variability of the Sea Surface Temperature around Cuba, S. Cerdeira-Estrada, Frank E. Muller-Karger, and A. Gallegos-García

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COMPS, SEACOOS and Near-Shore Waves, Rick Cole, Neil Trenaman, Robert H. Weisberg, and Kevin Amundsen

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Autobiographical Sketches of Women in Oceanography, Kendra L. Daly