This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2009

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Reorganization of Pacific Deep Waters Linked to Middle Miocene Antarctic Cryosphere Expansion: A Perspective from the South China Sea, Jun Tian, Amelia E. Shevenell, Pinxian Wang, Qianyu Li, and Xinrong Cheng

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Fish Effects on Ocean Current Observations in the Cariaco Basin, Jyotika I. Virmani and Robert H. Weisberg

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Linkages between Environmental Conditions and Recreational King Mackerel (Scomberomorus Cavalla) Catch Off West-Central Florida, C. C. Wall, Frank E. Muller-Karger, and M. A. Roffer

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Isotopic Evidence for Dead Fish Maintenance of Florida Red Tides, with Implications for Coastal Fisheries Over Both Source Regions of the West Florida Shelf and Within Downstream Waters of the South Atlantic Bight, John J. Walsh, Robert H. Weisberg, J. M. Lenes, F. R. Chen, Dwight A. Dieterle, Lianyuan Zheng, Kendall L. Carder, and Gabriel A. Vargo

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A Coordinated Coastal Ocean Observing and Modeling System for the West Florida Continental Shelf, Robert H. Weisberg, Alexander Barth, Aida Alvera-Azcarate, and Lianyuan Zheng

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West Florida Shelf Mean Circulation Observed with Long-Term Moorings, Robert H. Weisberg, Yonggang Liu, and Dennis A. Mayer

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Detecting Marine Hazardous Substances and Organisms: Sensors for Pollutants, Toxins, and Pathogens, O. Zielinski, J. A. Busch, A. D. Cembella, Kendra L. Daly, J. Engelbrektsson, A. K. Hannides, and H. Schmidt

Submissions from 2008

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Enhanced Seamount Location Database for the Western and Central Pacific Ocean: Screening and Cross-Checking of 20 Existing Datasets, V. Allain, J. A. Kerandel, S. Andréfouët, F. Magron, M. Clark, D. S. Kirby, and Frank E. Muller-Karger

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Colored Dissolved Organic Material Increases Resiliency of Coral Reefs by Controlling Exposure to UVR, L. Ayoub, Pamela Hallock, and Paula G. Coble

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Benefit of Nesting a Regional Model into a Large-Scale Ocean Model Instead of Climatology. Application to the West Florida Shelf, A. Barth, Aida Alvera-Azcarate, and Robert H. Weisberg

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A Nested Model Study of the Loop Current Generated Variability and Its Impact on the West Florida Shelf, Alexander Barth, Aida Alvera-Azcarate, and Robert H. Weisberg

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Assimilation of High-Frequency Radar Currents in a Nested Model of the West Florida Shelf, Alexander Barth, Aida Alvera-Azcarate, and Robert H. Weisberg

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Remotely Sensed Sea-Surface Chlorophyll and Poc Flux at Deep Gulf of Mexico Benthos Sampling Stations, D. C. Biggs, C. Hu, and Frank E. Muller-Karger

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Viral Diversity and Dynamics in an Infant Gut, Mya Breitbart, Matthew Haynes, Scott Kelley, Florent Angly, Robert Edwards, Ben Felts, Joseph Mahaffy, Jennifer Mueller, James Nulton, Steve Rayhawk, Beltran Rodriguez-Brito, Peter Salamon, and Forest Rohwer

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Marine Viruses: Community Dynamics, Diversity, and Impact on Microbial Processes, Mya Breitbart, Mathias Middelboe, and Forest Rohwer

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Distribution of Heavy Metals and Foraminiferal Assemblages in Sediments of Biscayne Bay, Florida, USA, Elizabeth A. Carnahan, Ana M. Hoare, Pamela Hallock, Barbara H. Lidz, and Christopher D. Reich

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Analysis of Large-scale Ocean Bottom Pressure Variability in the North Pacific, Don P. Chambers and Josh K. Willis

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Biodiversity and Biogeography of Phages in Modern Stromatolites and Thrombolites, Christelle Desnues, Beltran Rodriguez-Brito, Steve Rayhawk, Scott Kelley, and Mya Breitbart

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Functional Metagenomic Profiling of Nine Biomes, Elizabeth Dinsdale, Robert Edwards, Dana Hall, Florent Angly, Mya Breitbart, Lauren D. McDaniel, and John Paul

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A Retrospective Analysis and Comparative Study of Stony Coral Assemblages in Biscayne National Park, FL (1977-2000), Jennifer M. Dupont, Walter C. Jaap, and Pamela Hallock

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A Depositional Model and Paleoecological Reconstruction of the Lower Tortonian Distally Steepened Ramp of Menorca (Balearic Islands, Spain), Mateu-Vicens Guillem, Pamela Hallock, and Marco Brandano

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Cenozoic Evolution of Larger Benthic Foraminifers: Paleoceanographic Evidence for Changing Habitats, Pamela Hallock

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On the Remote Monitoring of Karenia Brevis Blooms of the West Florida Shelf, C. Hu, R. Luerssen, Frank E. Muller-Karger, Kendall L. Carder, and C. Heil

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Mexico-U.S. Harmful Algal Bloom Monitoring Efforts, C. Hu and Frank E. Muller-Karger

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A Bacterial Metapopulation Adapts Locally to Phage Predation Despite Global Dispersal, Victor Kunin, Shaomei He, Falk Warnecke, S. Brook Peterson, Hector Garcia Martin, Matthew Haynes, Natalia Ivanova, Linda Blackall, Mya Breitbart, Forest Rohwer, Katherine McMahon, and Philip Hugenholtz

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Saharan Dust and Phosphatic Fidelity: A Three-Dimensional Biogeochemical Model of Trichodesmium as a Nutrient Source for Red Tides on the West Florida Shelf, J. M. Lenes, B. A. Darrow, John J. Walsh, J. M. Prospero, R. He, Robert H. Weisberg, Gabriel A. Vargo, and C. A. Heil

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Patterns of Upper Layer Circulation Variability in the South China Sea from Satellite Altimetry Using the Self-Organizing Map, Yonggang Liu, Robert H. Weisberg, and Yaochu Yuan

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Status of Sensors for Physical Oceanographic Measurements, Mark Luther, Sherryl Gilbert, and Tamburri Tamburri

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Spatial and Temporal Variability of SeaWiFS Chlorophyll a Distributions West of the Antarctic Peninsula: Implications for Krill Production, Marina Marrari, Kendra L. Daly, and Chuanmin Hu

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Metagenomic Analysis of Lysogeny in Tampa Bay: Implications for Prophage Gene Expression, Lauren D. McDaniel, Mya Breitbart, Jennifer M. Mobberley, Amy Long, Matthew Haynes, Forest Rohwer, and John Paul

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A Numerical Simulation of Residual Circulation in Tampa Bay. Part II: Lagrangian Residence Time, Steven D. Meyers and Mark E. Luther

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A Three-Dimensional Biophysical Model of Karenia Brevis Dynamics on the West Florida Shelf: a Look at Physical Transport and Potential Zooplankton Grazing Controls, Scott P. Milroy, Dwight A. Dieterle, Ruoying He, Gary J. Kirkpatrick, Kristen M. Lester, Karen A. Steidinger, Gabriel A. Vargo, John J. Walsh, and Robert H. Weisberg

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Observations of a Red Sea Fringing Coral Reef under Extreme Environmental Conditions, Z. Moustafa, Pamela Hallock, M. S. Moustafa, and M. Z. Moustafa

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In Situ Observations and Satellite Remote Sensing in Seacoos: Program Development and Lessons Learned, James R. Nelson and Robert H. Weisberg

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Quantification of Two Decades of Shallow-Water Coral Reef Habitat Decline in the Florida Keys National Marine Sanctuary Using Landsat Data (1984-2002), D. A. Palandro, S. Andréfouët, C. Hu, P. Hallock, Frank E. Muller-Karger, P. Dustan, M. K. Callahan, C. Kranenburg, and C. R. Beaver

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Assessing the Distribution of Patch Reef Morphologies in the Lower Florida Keys, USA, using IKONOS Satellite Imagery, M. Peters, D. Palandro, Pamela Hallock, and E. Shinn

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Carbonate Factories: A Conundrum in Sedimentary Geology, L. Pomar and Pamela Hallock

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Applications of the SEDCON and FORAM Indices on Patch Reefs in Biscayne National Park, FL, USA, A. Ramirez, C. Daniels, and Pamela Hallock

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Seacoos Program Management, Harvey E. Seim, James Nelson, Madilyn Fletcher, C. N. K. Mooers, Lundie Spence, Robert H. Weisberg, Francisco Werner, Sarah M. Smith, and Russ Lea

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High Frequency Radar Observing Systems in SEACOOS: 2002-2007 Lessons Learned, Lynn K. Shay, Harvey E. Seim, David Savidge, Richard Styles, and Robert H. Weisberg

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Middle Miocene Ice sheet Dynamics, Deep‐Sea Temperatures, and Carbon Cycling: A Southern Ocean Perspective, Amelia E. Shevenell, James P. Kennett, and David W. Lea

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A Comparison of Near-Surface Current Measurement Methods, Eric Siegel, Dennis A. Mayer, and Robert H. Weisberg

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Estimating Geocenter Variations from a Combination of GRACE and Ocean Model Output, Sean Swenson, D. Chambers, and John Wahr

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Si Cycle in the Cariaco Basin, Venezuela: Seasonal Variability in Silicate Availability and the Si:C:N Composition of Sinking Particles, Robert C. Thunell, Claudia Benitez-Nelson, Frank E. Muller-Karger, Laura Lorenzoni, Mary Scranton, Ramon Varela, Yrene Astor, and Kent A. Fanning

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Waves Initiative Within Seacoos, George Voulgaris, Brian K. Haus, Paul Work, Lynn K. Shay, Harvey E. Seim, Robert H. Weisberg, and James R. Nelson

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Regional-Scale Seagrass Habitat Mapping in the Wider Caribbean Region Using Landsat Sensors: Applications to Conservation and Ecology, C. C. Wabnitz, S. Andréfouët, D. Torres-Pulliza, Frank E. Muller-Karger, and P. A. Kramer

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Satellite Remote Sensing of Surface Oceanic Fronts in Coastal Waters off West–Central Florida, Carrie C. Wall, Frank E. Muller-Karger, Mitchell A. Roffer, Chuanmin M. Hu, Wensheng Yao, and Mark E. Luther

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Epilogue to SEACOOS, Robert H. Weisberg

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Hurricane Storm Surge Simulations Comparing Three-Dimensional with Two-Dimensional Formulations Based on an Ivan-like Storm over the Tampa Bay, Florida Region, Robert H. Weisberg and Lianyuan Zheng

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Assessing the Globally Averaged Sea Level Budget on Seasonal to Interannual Timescales, Josh K. Willis, D. Chambers, and R Steven Nerem

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GRACE Observes Small-scale Mass Loss in Greenland, B. Wouters, D. Chambers, and E.J. O. Schrama

Submissions from 2007

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Micro- and Macronutrients in the Southeastern Bering Sea: Insight Into Iron-replete and Iron-depleted Regimes, Ana Aguilar-Islas, Matthew Hurst, Kristen N. Buck, Bettina Sohst, Geoffrey Smith, Maeve Lohan, and Kenneth Bruland

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Multivariate Reconstruction of Missing Data in Sea Surface Temperature, Chlorophyll, and Wind Satellite Fields, Aida Alvera-Azcarate, Alexander Barth, J. M. Beckers, and Robert H. Weisberg

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Filtering Inertia-Gravity Waves from the Initial Conditions of the Linear Shallow Water Equations, Alexander Barth, Jean-Marie Beckers, Aida Alvera-Azcarate, and Robert H. Weisberg

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Exploring the Vast Diversity of Marine Viruses, Mya Breitbart, Luke Thompson, Curtis Suttle, and Matthew Sullivan

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The Physicochemical Speciation of Dissolved Iron in the Bering Sea, Alaska, Kristen N. Buck and Kenneth W. Bruland

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Dissolved Iron Speciation in Two Distinct River Plumes and an Estuary: Implications for Riverine Iron Supply, Kristen N. Buck, Maeve Lohan, Carolyn J. M. Berger, and Kenneth W. Bruland

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A Review of Total Dissolved Copper and Its Chemical Speciation in San Francisco Bay, California, Kristen N. Buck, John R.M. Ross, A. Russell Flegal, and Kenneth W. Bruland

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Gravimetric Methods – Spacecraft Altimeter Measurements, Don P. Chambers

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Effects of Ice Melting on GRACE Observations of Ocean Mass Trends, Don P. Chambers, Mark E. Tamisiea, R Steven Nerem, and John C. Ries

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Colored Dissolved Organic Matter in Tampa Bay, Florida, Z. Chen, C. Hu, R. N. Conmy, Frank E. Muller-Karger, and P. Swarzenski

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Monitoring Turbidity in Tampa Bay Using Modis/Aqua 250-M Imagery, Z. Chen, C. Hu, and Frank E. Muller-Karger

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Remote Sensing of Water Clarity in Tampa Bay, Z. Chen, Frank E. Muller-Karger, and C. Hu

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Anomalous Features Observed on Tests of Live Archaiasine Foraminifers from the Florida Keys, USA, Heidi Crevison and Pamela Hallock

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Chapter 9 Zooplankton Processes in Arctic and Antarctic Polynyas, D. Deibel and Kendra L. Daly

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Reconstructing Twentieth-Century Sea Surface Temperature Variability in the Southwest Pacific: A Replication Study Using Multiple Coral Sr/Ca Records from New Caledonia, Kristine L. DeLong, Terrence M. Quinn, and Frederick W. Taylor

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Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil, Noah Fierer, Mya Breitbart, James Nulton, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, and Robert Jackson

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Lesion Regeneration Rates in Reef-Building Corals Montastraea spp. as Indicators of Colony Condition, Elizabeth M. Fisher, John E. Fauth, Pamela Hallock-Muller, and Cheryl M. Woodley

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Satellite-Derived Surface Current Divergence in Relation to Tropical Atlantic SST and Wind, Robert W. Helber, Robert H. Weisberg, Fabrice Bonjean, Eric S. Johnson, and Gary S. Lagerloef

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Response of Sea Surface Properties to Hurricane Dennis in the Eastern Gulf of Mexico, C. Hu and Frank E. Muller-Karger

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Developing Standards for Dissolved Iron in Seawater, Kenneth Johnson, Virginia Elrod, Steve Fitzwater, Joshua Plant, Edward Boyle, Bridget Bergquist, and Kristen N. Buck

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Power Law Rank–abundance Models for Marine Phage Communities, Karl Heinz Karl, Beltran Rodriguez-Brito, Mya Breitbart, David Bangor, Florent Angly, Ben Felts, James Nulton, Forest Rohwer, and Peter Salamon

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Euphotic Zone Depth: Its Derivation and Implication to Ocean-Color Remote Sensing, ZhongPing Lee, Alan Weidemann, John Kindle, Robert Arnone, Kendall L. Carder, and Curtiss Davis

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Rectification of the Bias in the Wavelet Power Spectrum, Yonggang Liu, X. San Liang, and Robert H. Weisberg

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Ocean Currents and Sea Surface Heights Estimated Across the West Florida Shelf, Yonggang Liu and Robert H. Weisberg

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Current Patterns on the West Florida Shelf from Joint Self-Organizing Map Analyses of Hf Radar and Adcp Data, Yonggang Liu, Robert H. Weisberg, and Lynn K. Shay

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Nummulites, A. R. Loeblich Jr. and Pamela Hallock

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Macroarray Analysis of Gene Expression in a Marine Pseudotemperate Bacteriophage, Amy Long, Stacey S. Patterson, and John H. Paul

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Water Level Observations for Storm Surge, Mark E. Luther, Clifford Ronald Merz, Jeffrey Scudder, Stephen R. Baig, Jennifer Pralgo, Stephen Gill, and Gerald Hovis

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On the Attraction of Larval Fishes to Reef Sounds, David A. Mann, Brandon M. Casper, Kelly S. Boyle, and Timothy C. Tricas

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Modern Climate Forcing of Terrigenous Deposition in the Tropics (Cariaco Basin, Venezuela), N. C. Martinez, R. W. Murray, R. C. Thunell, L. C. Peterson, Frank E. Muller-Karger, Y. Astor, and R. Varela

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Velocity Comparisons from Upward and Downward Acoustic Doppler Current Profilers on the West Florida Shelf, Dennis A. Mayer, Jyotika I. Virmani, and Robert H. Weisberg

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Development of a Self-Contained, Satellite Based, Moored Surface Buoy Position Tracking Device, Clifford R. Merz, Robert H. Weisberg, Patrick A. Smith, Jason A. Law, Jeff Donovan, Graham M. Tilbury, Chad Lembke, and Douglass Myhre

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A Numerical Simulation of Residual Circulation in Tampa Bay. Part I: Low-frequency Temporal Variations, Steven D. Meyers, Mark E. Luther, Monica Wison, Heather Havens, Amanda Linville, and Kristin Sopkin

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Effect of Shoreline Meteorological Measurements on NOAA Buoy Model Prediction of Coastal Air–Sea Gas Transfer, Connie Mizak, Scott Campbell, Kristin Sopkin, Sherryl Gilbert, Mark E. Luther, and Noreen Poor

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Comment on “Estimating Future Sea Level Change from Past Records” by Nils-Axel Mörner, R. S. Nerem, A. Cazenave, Don Chambers, L. Fu, E. W. Leuliette, and Gary T. Mitchum

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On the Absorption of Light in the Orinoco River Plume, A. L. Odriozola, R. Varela, C. Hu, Y. Astor, Laura Lorenzoni, and Frank E. Muller-Karger

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Baroclinic Tidal Flows and Inundation Processes in Cook Inlet, Alaska: Numerical Modeling and Satellite Observations, L. Y. Oey, T. Ezer, C. Hu, and Frank E. Muller-Karger

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Changes in Coral-Reef Structure through the Miocene in the Mediterranean Province: Adaptive Versus Environmental Influence, Luis Pomar and Pamela Hallock

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Top-Down Control of Phytoplankton by Oysters in Chesapeake Bay, USA: Reply to Newell et al. (2007), Lawrence R. Pomeroy, Christopher F. D'Elia, and Linda C. Schaffner

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Roundtable Discussion Groups Summary Papers: Environmental Bio-Indicators in Coral Reef Ecosystems: the Need to Align Research, Monitoring, and Environmental Regulation, Paul W. Sammarco, Pamela Hallock, Judith C. Lang, and Richard S. LeGore

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Progressive Dolomitization of Florida Limestone Recorded by Alkaline Earth Element Concentrations in Saline, Geothermal, Submarine Springs, Johan Schijf and Robert H. Byrne

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Validating a Biogeochemical Watershed Disturbance and Climate Change Proxy: Tampa Bay. FL, Patrick Schwing, E. Martinez, A. J. Pyrtle, and S. Haynes

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High-Frequency Radar Mapping of Surface Currents Using Wera, Lynn K. Shay, Jorge Martinez-Pedraja, Thomas M. Cook, Brian K. Haus, and Robert H. Weisberg

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Upper Ocean Response of the Mesoamerican Barrier Reef System to Hurricane Mitch and Coastal Freshwater Inputs: A Study Using Sea-Viewing Wide Field-Of-View Sensor (SEAWIFS) Ocean Color Data and a Nested-Grid Ocean Circulation Model, Jinyu Sheng, Liang Wang, Serge Andrefouet, Chuanmin Hu, Bruce G. Hatcher, Frank E. Muller-Karger, Bjoern Kjerfve, William D. Heyman, and Bo Yang

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Cenozoic Antarctic Cryosphere Evolution: Tales from Deep-Sea Sedimentary Records, Amelia E. Shevenell

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Orbital and Atmospheric Forcing of Western Antarctic Peninsula Climate in the Holocene: The TEX86 Paleotemperature Record of Palmer Deep, Amelia E. Shevenell, A. E. Ingalls, and E. W. Domack

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Modeling Air/Sea Flux Parameters in a Coastal Area: A Comparative Study of Results from the TOGA COARE Model and the NOAA Buoy Model, Kristin Sopkin, Connie Mizak, Sherryl Gilbert, Vembu Subramaniam, Mark E. Luther, and Noreen Poor

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Improvements in Data Management Practices Within West Florida Shelf Coastal Ocean Monitoring and Prediction System, Vembu Subramaniam, Jeff Donovan, Jeremy Atkins, Mark E. Luther, and Robert H. Weisberg

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The Oxygen Isotope Composition of Planktonic Foraminifera from the Cariaco Basin, Venezuela: Seasonal and Interannual Variations, K. Tedesco, R. Thunell, Y. Astor, and Frank E. Muller-Karger