This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2013

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Sources of Δ15N Variability in Sinking Particulate Nitrogen in the Cariaco Basin, Venezuela, Enrique Montes, R. Thunell, Frank E. Muller-Karger, Laura Lorenzoni, E. Tappa, L. Troccoli, Y. Astor, and R. Varela

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The Maredat Global Database of High Performance Liquid Chromatography Marine Pigment Measurements, Frank E. Muller-Karger

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Satellite Remote Sensing in Support of an Integrated Ocean Observing System, Frank E. Muller-Karger, M. Roffer, N. Walker, M. Oliver, O. Schofield, M. Abbott, H. Graber, R. Leben, and G. Goni

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Environmental Control of the Dominant Phytoplankton in the Cariaco Basin: a Hierarchical Bayesian Approach, C. M. Mutshinda, L. Troccoli-Ghinaglia, Z. V. Finkel, Frank E. Muller-Karger, and A. J. Irwin

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Metagenomic Identification of a nodavirus and a Circular ssDNA Virus in Semi-purified Viral Nucleic Acids from the Hepatopancreas of Healthy Farfantepenaeus duorarum hrimp, Terry Fei Fan Ng, Shankar Alavandi, Arvind Varsani, Scott Burghart, and Mya Breitbart

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Distinct Lineage of Vesiculovirus from Big Brown Bats, United States, Terry Fei Fan Ng, Cindy Driscoll, Maria Paz Carlos, Algernon Prioleau, Robert Schmieder, Bhakti Dwivedi, Jakk Wong, Yunhee Cha, Steven Head, Mya Breitbart, and Eric Delwart

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Micro-Grazer Biomass, Composition and Distribution across Prey Resource and Dissolved Oxygen Gradients in the Far Eastern Tropical North Pacific Ocean, M. B. Olson and Kendra L. Daly

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Optical Contrast of Oil Dispersed in Seawater under Windy Conditions, Z. Otremba, O. Zielinski, and Chuanmin Hu

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Novel Cyclovirus Discovered in the Florida Woods Cockroach Eurycotis floridana (Walker), Marco Padilla-Rodriguez, Karyna Rosario, and Mya Breitbart

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Toxicity and Mutagenicity of Gulf of Mexico Waters During and After the Deepwater Horizon Oil Spill, John H. Paul, David J. Hollander, Paula G. Coble, Kendra L. Daly, Sue Murasko, David C. English, Jonelle Basso, Jennifer A. Delaney, Lauren D. McDaniel, and Charles C. Kovach

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Modeling Environmental Controls on the Transport and Fate of Early Life Stages of Antarctic Krill (Euphausia superba) on the Western Antarctic Peninsula Continental Shelf, Andrea Piñones, Eileen E. Hofmann, Kendra L. Daly, Michael S. Dinniman, and John M. Klinck

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Modeling the remote and local connectivity of Antarctic Krill Populations along the Western Antarctic Peninsula, Andrea Piñones, Eileen E. Hofmann, Kendra L. Daly, Michael S. Dinniman, and John M. Klinck

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Reply to Shanmugam, G., Comment on "Internal Waves, an Underexplored Source of Turbulence Events in the Sedimentary Record" by Pomar Et Al. [Earth-Science Reviews, 111 (2012), 56-81], Earth Science Reviews (2012), L. Pomar, Michele Morsilli, Pamela Hallock, B. Bádenas, and D. Bourgault

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Discovery of a Novel Mastrevirus and Alphasatellite-like Circular DNA in Dragonflies (Epiprocta) from Puerto Rico, Karyna Rosario, Marco Padilla-Rodriguez, Simona Kraberger, Daisy Stainton, Darren Martin, Mya Breitbart, and Arvind Varsani

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The Southern Caribbean Upwelling System: Sea Surface Temperature, Wind Forcing and Chlorophyll Concentration Patterns, Digna T. Rueda-Roa and Frank E. Muller-Karger

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Large-Scale Passive Acoustic Monitoring of Fish Sound Production on the West Florida Shelf, Carrie C. Wall, Peter Simard, Chad Lembke, and David A. Mann

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Tracking Subsurface Oil in the Aftermath of the Deepwater Horizon Well Blowout, Robert H. Weisberg, Lianyuan Zheng, and Yonggang Liu

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New Approach to Analysis of Voltammetric Ligand Titration Data Improves Understanding of Metal Speciation in Natural Waters, Mona Wells, Kristen N. Buck, and Sylvia Sander

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Potential Habitat of Acropora spp. on Florida Reefs, Katherine E. Wirt, Pamela Hallock, David Palandro, and Kendra L. Daly

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Zooplankton in the Eastern Tropical North Pacific: Boundary Effects of Oxygen Minimum Zone Expansion, Karen F. Wishner, Dawn M. Outram, Brad A. Seibel, Kendra L. Daly, and Rebecca L. Williams

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Real-World Problem Solving in Entry-Level Programming Courses: A Case Study on the Deepwater Horizon Oil Spill, Mingrui Zhang, Chuanmin Hu, and Guleng Amu

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Assessment of Satellite-Derived Diffuse Attenuation Coefficients and Euphotic Depths in South Florida Coastal Waters, J. Zhao, Brian B. Barnes, N. Melo, D. English, B. Lapointe, Frank E. Muller-Karger, B. Schaeffer, and C. Hu

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Three-Dimensional Structure of a Karenia Brevis Bloom: Observations from Gliders, Satellites, and Field Measurements, Jun Zhao, Chuanmin Hu, Jason M. Lenes, Robert H. Weisberg, Chad Lembke, David C. English, Jennifer Wolny, Lianyuan Zheng, John J. Walsh, and Gary J. Kirkpatrick

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Implications from the Comparisons between Two- and Three-Dimensional Model Simulations of the Hurricane Ike Storm Surge, Lianyuan Zheng, Robert H. Weisberg, Yong Huang, Rick Luettich, Johannes J. Westerink, Patrick C. Kerr, Aaron S. Donahue, Gary Crane, and Linda Akli

Submissions from 2012

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Friction Dominated Exchange in a Florida Estuary, Kimberly D. Arnott, Arnoldo Valle-Levinson University of Florida, and Mark E. Luther

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MAA-Like Absorbing Substances in Florida Keys Phytoplankton Vary with Distance from Shore and CDOM: Implications for Coral Reefs, Lore M. Ayoub, Pamela Hallock, Paula G. Coble, and Susan S. Bell

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Acquisition of Airborne Imagery in Support of Deepwater Horizon Oil Spill Recovery Assessments, C. R. Bostater and Frank E. Muller-Karger

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Marine Viruses: Truth or Dare, Mya Breitbart

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Copper Toxicity in the San Francisco Bay-Delta, Kristen N. Buck

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SCOR Working Group 139: Organic Ligands- A Key Control on Trace Metal Biogeochemistry, Kristen N. Buck, Maeve Lohan, and Sylvia Sander

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The Organic Complexation of Iron and Copper: An Intercomparison of Competitive Ligand Exchange‐adsorptive Cathodic Stripping Voltammetry (CLE‐ACSV) Techniques, Kristen N. Buck, James Moffett, Katherine Barbeau, Randelle Bundy, Yoshiko Kondo, and Jingfeng Wu

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Physical Environments of the Caribbean Sea, Iliana Chollett, Peter J. Mumby, Frank E. Muller-Karger, and Chuanmin Hu

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Seasonal and Spatial Heterogeneity of Recent Sea Surface Temperature Trends in the Caribbean Sea and Southeast Gulf of Mexico, I. Chollett, Frank E. Muller-Karger, S. F. Heron, W. Skirving, and P. J. Mumby

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Description and Ecology of a New Middle Ordovician (Llanvirn) Odontopleurid Trilobite from the Builth Inlier of Mid-Wales, with a Review of the Genus Meadowtownella, Tim M. Conway and Joseph P. Botting

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Data Product Specification for Photosynthetically Active Radiation (PAR): From Satlantic Instrument on RSN Shallow Profiler, Kendra L. Daly

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Bacterial Communities Associated with the Ctenophores Mnemiopsis leidyi and Beroe ovata, Camille Daniels and Mya Breitbart

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PhiSiGns: An Online Tool to Identify Signaturegenes in Phages and Design PCR Primers Forexamining Phage Diversity, Bhakti Dwivedi, Robert Schmieder, Dawn Goldsmith, Robert Edwards, and Mya Breitbart

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Detection and Tracking of Ships in Open Sea with Rapidly Moving Buoy-Mounted Camera System, Sergiy Fefilatyev, Dmitry Goldgof, Matthew Shreve, and Chad Lembke

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Label-Noise Reduction with Support Vector Machines, Sergiy Fefilatyev, Matthew Adam Shreve, Kurt Kramer, Lawrence Hall, Dmitry Goldgof, Rangachar Katsuri, Kendra L. Daly, Andrew Walker Remsen, and Horst Bunke

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The Organic Complexation of Iron in the Marine Environment: A Review, Martha Gledhill and Kristen N. Buck

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The FoRAM Index Revisited: Uses, Challenges, and Limitations, Pamela Hallock

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An Index to Assess the Health and Benefits of the Global Ocean, Benjamin S. Halpern, Catherine Longo, Darren Hardy, Karen L. McLeon, Jameal F. Samhouri, Steven K. Katona, Kristen Kleisner, Sarah E. Lester, Jennifer O'Leary, Marla Ranelletti, and Kendra L. Daly

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Benjamin P. Flower (1962–2012), David W. Hastings, Amelia E. Shevenell, and James P. Kennett

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Integrating Observing Systems to Benefit Stakeholders: a Case Study in the Gulf of Mexico, Ann E. Jochens, Matthew K. Howard, Lisa Campbell, Ruth Mullins-Perry, Gary J. Kirkpatrick, Barbara Kirkpatrick, Chris Simoniello, Chuanmin Hu, and Robert H. Weisberg

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Integrating Observing Systems to Benefit Stakeholders: A Case Study in the Gulf of Mexico, Ann E. Jochens, Matthew K. Howard, Lisa Campbell, Ruth Mullins-Perry, Gary Kirkpatrick, Barbara Kirkpatrick, Chris Simoniello, Chuanmin Hu, Robert H. Weisburg, Chad Lembke, Alina Corcoran, Jim Ivey, and Steven H. Wolfe

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Quasi-Lagrangian Drifter Studies of Iron Speciation and Cycling Off Point Conception, California, Andrew King, Kristen N. Buck, and Katherine Barbeau

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A 1-D Simulation Analysis of the Development and Maintenance of the 2001 Red Tide of the Ichthyotoxic Dinoflagellate Karenia Brevis on the West Florida Shelf, Jason M. Lenes, Brian P. Darrow, John J. Walsh, J. K. Jolliff, F. R. Chen, Robert H. Weisberg, and Lianyuan Zheng

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Varying Mesoscale Structures Influence Larval Fish Distribution in the Northern Gulf of Mexico, D. Lindo-Atichati, F. Bringas, G. Goni, B. Muhling, Frank E. Muller-Karger, and S. Habtes

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Seasonal Variability on the West Florida Shelf, Yonggang Liu and Robert H. Weisberg

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Comparison of the X-Track Altimetry Estimated Currents with Moored Adcp and Hf Radar Observations on the West Florida Shelf, Yonggang Liu, Robert H. Weisberg, Stefano Vignudelli, Laurent Roblou, and Clifford R. Merz

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Potential Role of Event-Driven Sediment Transport on Sediment Accumulation in the Cariaco Basin, Venezuela, Laura Lorenzoni, C. R. Benitez-Nelson, R. C. Thunell, D. Hollander, R. Varela, Y. Astor, F. A. Audemard, and Frank E. Muller-Karger

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Phytoplankton Responses to Atmospheric Metal Deposition in the Coastal and Open-ocean Sargasso Sea, Katherine Mackey, Kristen N. Buck, John Casey, Abigail Cid, Michael Lomas, Yoshiki Sohrin, and Adina Paytan

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Salinity Gradient Power (SGP): A Developmental Roadmap Covering Existing Generation Technologies and Recent Investigative Results into the Feasibility of Bipolar Membrane-Based Salinity Gradient Power Generation, Clifford R. Merz, Wilfrido A. Moreno, Marilyn Barger, and Stephen M. Lipka

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Evolution of the USF/CMS Codar and WERA HF Radar Network, Clifford R. Merz, Robert H. Weisberg, and Yonggang Liu

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Vertical Fluxes of Particulate Biogenic Material through the Euphotic and Twilight Zones in the Cariaco Basin, Venezuela, Enrique Montes, Frank E. Muller-Karger, R. Thunell, D. Hollander, Y. Astor, R. Varela, I. Soto, and Laura Lorenzoni

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Mesophotic Coral Buildups in a Prodelta Setting (Late Eocene, Southern Pyrenees, Spain): a Mixed Carbonate-Siliciclastic System, Michele Morsilli, Francesca R. Bosellini, Luis Pomar, Pamela Hallock, Marc Aurell, and Cesare A. Papazzoni

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Overlap between Atlantic Bluefin Tuna Spawning Grounds and Observed Deepwater Horizon Surface Oil in the Northern Gulf of Mexico, B. A. Muhling, M. A. Roffer, J. T. Lamkin, G. W. Ingram, M. Upton, G. Gawlikowski, Frank E. Muller-Karger, S. Habtes, and W. J. Richards

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Developing Integrated Models of Southern Ocean Food Webs: Including Ecological Complexity, Accounting for Uncertainty and the Importance of Scale, E. J. Murphy, R. D. Cavanaugh, E. E. Hofmann, S. L. Hill, A. J. Constable, D. P. Costa, M. H. Pinkerton, N. M. Johnston, P. N. Trathan, J. M. Klinck, D. A. Wolf-Gladrow, Kendra L. Daly, O. Maury, and S. C. Donney

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Spatially Resolved Genomic, Stable Isotopic, and Lipid Analyses of a Modern Freshwater Microbialite from Cuatro Ciénegas, Mexico, Nitti Nitti, Camille Daniels, Janet Siefert, Valeria Souza, David Hollander, and Mya Breitbart

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Ocean Time-series Reveals Recurring Seasonal Patterns of Virioplankton Dynamics in the Northwestern Sargasso Sea, Rachel Parsons, Mya Breitbart, Michael Lomas, and Craig Carlson

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Internal Waves, an Under-Explored Source of Turbulence Events in the Sedimentary Record, L. Pomar, M. Morsili, Pamela Hallock, and B. Bádenas

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Diverse Circular ssDNA Viruses Discovered in Dragonflies (Odonata: Epiprocta), Karyna Rosario, Anisha Dayaram, Milen Marinov, Jessica Ware, Simona Kraberger, Daisy Stainton, Mya Breitbart, and Arvind Varsani

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A Field Guide to Eukaryotic Circular Single-stranded DNA Viruses: Insights Gained from Metagenomics, Karyna Rosario, Siobain Duffy, and Mya Breitbart

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A National Glider Network for Sustained Observation of the Coastal Ocean, Daniel L. Rudnick, Rebecca Baltes, Michael Crowley, Oscar Schofield, Craig M. Lee, and Chad Lembke

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Improving Understanding of Organic Metal‐binding Ligands in the Ocean, Sylvia Sander, Kristen N. Buck, and Maeve Lohan

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Binational Collaboration to Study Gulf of Mexico'S Harmful Algae, I. Soto, Chuamin Hu, K. Steidinger, Frank E. Muller-Karger, Jennifer Cannizzaro, J. Wolny, S. Cerdeira-Estrada, E. Santamaria-Del-Angel, F. Tafoya-Del-Angel, P. Alvarez-Torres, J. Herrera Silveira, and J. Allen

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Ecosystem Responses in the Southern Caribbean Sea to Global Climate Change, G. T. Taylor, Frank E. Muller-Karger, R. C. Thunell, M. I. Scranton, Y. Astor, R. Varela, L. T. Ghinaglia, Laura Lorenzoni, Kent A. Fanning, S. Hameed, and O. Doherty

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Observations on the Life Cycle of the Symbiont-Bearing Foraminifer Amphistegina Lobifera Larsen, an Invasive Species in Coastal Ecosystems of the Aegean Sea (Greece, E. Mediterranean), Maria V. Triantaphyllou, Margarita D. Dimiza, Olga Koukousioura, and Pamela Hallock

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Shelf-Scale Mapping of Sound Production by Fishes in the Eastern Gulf of Mexico, using Autonomous Glider Technology, Carrie C. Wall, Chad Lembke, and David A. Mann

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A Critique of Alternative Power Generation for Florida by Mechanical and Solar Means, Robert H. Weisberg, Yonggang Liu, Clifford R. Merz, Jyotika I. Virmani, and Lianyuan Zheng

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Modeling the West Florida Coastal Ocean by Downscaling from the Deep Ocean, across the Continental Shelf and into the Estuaries, Lianyuan Zheng and Robert H. Weisberg

Submissions from 2011

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Thermocline Characterisation in the Cariaco Basin: a Modelling Study of the Thermocline Annual Variation and Its Relation with Winds and Chlorophyll-A Concentration, Aida Alvera-Azcarate, Alexander Barth, Robert H. Weisberg, J. J. Castañeda, L. Vandenbulcke, and J. M. Beckers

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Running Head: Foram Assemblages from Three Substrata Comparison of Foraminiferal Assemblages from Three Kinds of Substrata, Durney Key, West-CentralFlorida, USA, K. Anderson and Pamela Hallock

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An Improved High-Resolution Sst Climatology to Assess Cold Water Events Off Florida, Brian B. Barnes, C. Hu, and Frank E. Muller-Karger

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Lipid Composition of Tropical and Subtropical Copepod Species of the Genus Rhincalanus (Copepoda: Eucalanidae): A Novel Fatty Acid and Alcohol Signature, Christine J. Cass, Stuart Wakeham, and Kendra L. Daly

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Directions in Biology for Ocean Observing, Kendra L. Daly

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Spatial Heterogeneity of Bacterial Communities in the Mucus of Montastraea annularis, Camille Daniels, Amy Zeifman, Kathy Heym, Kim Ritchie, Craig Watson, Ilze Berzins, and Mya Breitbart

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Detection of Anomalous Particles from the Deepwater Horizon Oil Spill Using the SIPPER3 Underwater Imaging Platform, Sergiy Fefilatyev, Kurt A. Kramer, Lawrence Hall, Dmitry Goldgof, Rangachar Katsuri, Andrew Walker Remsen, and Kendra L. Daly

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Development of phoH as a Novel Signature Gene for Assessing Marine Phage Diversity, Dawn Goldsmith, Giuseppe Crosti, Bhakti Dwivedi, Lauren McDaniel, Arvind Varsani, Curtis Suttle, Markus Weinbauer, Ruth-Anne Sandaa, and Mya Breitbart

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Foram Index, Pamela Hallock

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Foraminifera, Pamela Hallock

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Foraminifera are Useful Indicators of Environmental Conditions of Coral Reefs, Pamela Hallock

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Observations of Brachygnathia Superior (Underbite) in Wild Ruminates in Western Montana, USA, J. A. Hoy, G. T. Haas, R. D. Hoy, and Pamela Hallock

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Did the Northeastern Gulf of Mexico Become Greener after the Deepwater Horizon Spill?, Chuanmin Hu, Robert H. Weisberg, Yonggang Liu, Lianyuan Zheng, Kendra L. Daly, David C. English, Jun Zhao, and Gabriel A. Vargo

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Living Benthic Foraminifera as an Environmental Proxy in Coastal Ecosystems: A Case Study from the Aegean Sea (Greece, NE Mediterranean), Olga Koukousioura, Margarita D. Dimiza, Maria V. Triantaphyllou, and Pamela Hallock

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The Protection and Management of the Sargasso Sea: The Golden Floating Rainforest of the Atlantic Ocean, D.d’A. Laffoley, H.S.J. Roe, M.V. Angel, Ardron Ardron, Bates Bates, Boyd Boyd, Brooke Brooke, and Kristen N. Buck

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Front Matter, Yonggang Liu, Amy Macfadyen, Zhen-Gang Ji, and Robert H. Weisberg

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Introduction to Monitoring and Modeling the Deepwater Horizon Oil Spill, Yonggang Liu, Amy Macfadyen, Zhen-Gang Ji, and Robert H. Weisberg

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A Review of Self-Organizing Map Applications in Meteorology and Oceanography, Yonggang Liu and Robert H. Weisberg

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Evaluation of Trajectory Modeling in Different Dynamic Regions Using Normalized Cumulative Lagrangian Separation, Yonggang Liu and Robert H. Weisberg

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Evolution of the Loop Current System during the Deepwater Horizon Oil Spill Event as Observed with Drifters and Satellites, Yonggang Liu, Robert H. Weisberg, Chuanmin Hu, Charles C. Kovach, and Rolf R. Riethmüller

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Combining Numerical Ocean Circulation Models with Satellite Observations in a Trajectory Forecast System: a Rapid Response to the Deepwater Horizon Oil Spill, Yonggang Liu, Robert H. Weisberg, Chuanmin Hu, and Lianyuan Zheng

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Satellites, Models Combine to Track Deepwater Horizon Oil Spill, Yonggang Liu, Robert H. Weisberg, Chuanmin Hu, and Lianyuan Zheng

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Tracking the Deepwater Horizon Oil Spill: a Modeling Perspective, Yonggang Liu, Robert H. Weisberg, Chuanmin Hu, and Lianyuan Zheng

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Trajectory Forecast as a Rapid Response to the Deepwater Horizon Oil Spill, Yonggang Liu, Robert H. Weisberg, Chuanmin Hu, and Lianyuan Zheng

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Bio-Optical Characteristics of Cariaco Basin (Caribbean Sea) Waters, Laura Lorenzoni, C. Hu, R. Varela, G. Arias, L. Guzmán, and Frank E. Muller-Karger

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The Zooplankton of Marguerite Bay, Western Antarctic Peninsula—Part I: Abundance, Distribution, and Population Response to Variability in Environmental Conditions, Marina Marrari, Kendra L. Daly, Alexander Timonin, and Tatjana Semenova

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The Zooplankton of Marguerite Bay, Western Antarctic Peninsula—Part II: Vertical Distributions and Habitat Partitioning, Marina Marrari, Kendra L. Daly, Alexander Timonin, and Tatjana Semenova

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Severe 2010 Cold-Water Event Caused Unprecedented Mortality to Corals of the Florida Reef Tract and Reversed Previous Survivorship Patterns, Frank E. Muller-Karger, Brian B. Barnes, and Digna Rueda

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Chlorophyll Variability in the Northeastern Gulf of Mexico, B. Nababan, Frank E. Muller-Karger, C. Hu, and D. C. Biggs