This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2015

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Extracting Oil Slick Features From VIIRS Nighttime Imagery Using a Gaussian Filter and Morphological Constraints, Mengqiu Wang and Chuanmin Hu

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Basic Tenets for Coastal Ocean Ecosystems Monitoring, Robert H. Weisberg, Lianyuan Zheng, and Yonggang Liu

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Potential Habitat of Acropora spp. on Reefs of Florida, Puerto Rico, and the US Virgin Islands, Katherine Wirt

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Atmospheric Correction of Aisa Measurements Over the Florida Keys Optically Shallow Waters: Challenges in Radiometric Calibration and Aerosol Selection, Mingrui Zhang, Chuamin Hu, D. English, P. Carlson, Frank E. Muller-Karger, G. Toro-Farmer, and S. R. Herwitz

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Influences of Channel Deepening and Widening on the Tidal and Nontidal Circulations of Tampa Bay, Jun Zhu, Robert H. Weisberg, Lianyuan Zheng, and Shuzong Han

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On the Flushing of Tampa Bay, Jun Zhu, Robert H. Weisberg, Lianyuan Zheng, and Shuzong Han

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On the Salt Balance of Tampa Bay, Jun Zhu, Robert H. Weisberg, Lianyuan Zheng, and Hongshuai Qi

Submissions from 2014

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Productivity and Linkages of the Food Web of the Southern Region of the Western Antarctic Peninsula Continental Shelf, Tosca Ballerini, Eileen E. Hofmann, David G. Ainley, Kendra L. Daly, Marina Marrari, Christine A. Ribic, Walker O. Smith Jr., and John H. Steele

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Estimation of Diffuse Attenuation of Ultraviolet Light in Optically Shallow Florida Keys Waters from Modis Measurements, Brian Burnel Barnes, Chuanmin Hu, Jennifer P. Cannizzaro, Susanne E. Craig, David L. Jones, John C. Lehrter, Nelson Melo, Blake A. Schaeffer, and Richard Zepp

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A Time-Series View of Changing Surface Ocean Chemistry Due to Ocean Uptake of Anthropogenic Co2 and Ocean Acidification, Nicholas R. Bates, Yrene M. Astor, Matthew J. Church, Kim Currie, John E. Dore, Melchor González-Dávila, Laura Lorenzoni, Frank E. Muller-Karger, Jon Olafsson, and J. Magdalena Santana-Casiano

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Florida Gulf Bay Scallop (Argopecten Irradians Concentricus) Population Genetic Structure: Form, Variation, and Influential Factors, Theresa M. Bert, William S. Arnold, Ami E. Wilbur, Seifu Seyoum, Anne L. McMillen-Jackson, Sarah P. Stephenson, Robert H. Weisberg, and Laura A. Yarbro

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Distinct Pools of Dissolved Iron‐binding Ligands in the Surface and Benthic Boundary Layer of the California Current, Randelle Bundy, Dondra Biller, Kristen N. Buck, Kenneth Bruland, and Katherine Barbeau

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Disparity Between Planktonic Fish Egg and Larval Communities as Indicated by DNA Barcoding, Scott Burghart, Lauren Van Woudenberg, Camille Daniels, Steven Meyers, Ernst Peebles, and Mya Breitbart

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Eucalanoid Copepod Metabolic Rates in the Oxygen Minimum Zone of the Eastern Tropical North Pacific: Effects of Oxygen and Temperature, Christine J. Cass and Kendra L. Daly

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Assessment of Storage Lipid Accumulation Patterns in Eucalanoid Copepods from the Eastern Tropical Pacific Ocean, Christine J. Cass, Kendra L. Daly, and Stuart G. Wakeham

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Using Natural Abundance Radiocarbon To Trace the Flux of Petrocarbon to the Seafloor Following the Deepwater Horizon Oil Spill, Jeffrey Chanton, Tingting Zhao, Brad E. Rosenheim, Samantha H. Bosman, Charlotte Brunner, Kevin M. Yeager, Arne R. Dierks, and David J. Hollander

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In Search of Oil Seeps in the Cariaco Basin Using MODIS and MERIS Medium-Resolution Data, Shuangling Chen and Chuanmin Hu

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Quantification of Dissolved Iron Sources to the North Atlantic Ocean, Tim M. Conway and Seth G. John

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The Biogeochemical Cycling of Zinc and Zinc Isotopes in the North Atlantic Ocean, Tim M. Conway and Seth G. John

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Problems Associated with a Lipofuscin Extraction Method Used to Age Blue Crabs Callinectes sapidus Cultured in Florida, USA, Claire E. Crowley, Ryan L. Gandy, Kendra L. Daly, and Edward S. Van Vleet

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Women in Oceanography: Autobiographical Sketches, Kendra L. Daly

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The Gut of Geographically Disparate Ciona intestinalis Harbors a Core Microbiota, Larry J. Dishaw, Jaime Flores-Torres, Simon Lax, Kristina Gemayel, Brittany Leigh, Daniela Melillo, M. Gail Mueller, Lenina Natale, Ivana Zucchetti, Rosaria De Santis, Maria Rosaria Pinto, Gary W. Litman, and Jack W. Gilbert

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Biological Assessment of Eastern Oysters (Crassostrea virginica) Inhabiting Reef, Mangrove, Seawall, and Restoration Substrates, Michael Drexler, Melanie L. Parker, Stephen P. Geiger, William S. Arnold, and Pamela Hallock

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Initial Results of Ship Detection and Tracking Using Wera Hf Ocean Radar with Mimo Configuration, A. Dzvonkovskaya, T. Helzel, L. Peterson, Clifford R. Merz, Yonggang Liu, and Robert H. Weisberg

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Initial Surface Current Measurements on the West Florida Shelf Using Wera Hf Ocean Radar with Multiple Input Multiple Output (MIMO) Synthetic Aperture, Anna Dzvonkovskaya, Clifford R. Merz, Yonggang Liu, Robert H. Weisberg, Thomas Helzel, and Leif Peterson

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The Impact of Changing Surface Ocean Conditions on the Dissolution of Aerosol Iron, Matthew Fishwick, Peter Sedwick, Maeve Lohan, Pau Worsfold, Kristen N. Buck, Thomas Church, and Simon Ussher

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Real-Time Quality Control of Current Velocity Data on Individual Grid Cells in Wera Hf Radar, Roberto Gomez, Thomas Helzel, Leif Peterson, Matthias Kniephoff, Clifford R. Merz, Yonggang Liu, and Robert H. Weisberg

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Evaluation of Foraminiferal Trace Element Cleaning Protocols on the Mg/Ca of Marine Ostracod Genus Krithe, William Gray, Jonathan Holmes, and Amelia E. Shevenell

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A Comparison of Sampling Methods for Larvae of Medium and Large Epipelagic Fish Species during Spring Seamap Ichthyoplankton Surveys in the Gulf of Mexico, S. Habtes, Frank E. Muller-Karger, M. A. Roffer, J. T. Lamkin, and B. A. Muhling

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The Gulf of Mexico Ecohab: Karenia Program 2006-2012, Cynthia A. Heil, Deborah A. Bronk, L. K. Dixon, Gary L. Hitchcock, Gary J. Kirkpatrick, Margaret R. Mulholland, Judith M. O'Neil, John J. Walsh, Robert H. Weisberg, and Matthew Garrett

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Blooms of Karenia Brevis (Davis) G. Hansen & Ø. Moestrup on the West Florida Shelf: Nutrient Sources and Potential Management Strategies Based on a Multi-Year Regional Study, Cynthia A. Heil, L. Kellie Dixon, Emily Hall, Matthew Garrett, Jason M. Lenes, John J. Walsh, and Robert H. Weisberg

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Densovirus Associated with Sea-star Wasting Disease and Mass Mortality, Ian Hewson, Jason Button, Brent Gudenkauf, Benjamin Miner, Alisa Newton, Mya Breitbart, Elizabeth Fahsbender, and Kevin Lafferty

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Diversity of Environmental Single-Stranded DNA Phages Revealed by PCR Amplification of the Partial Major Capsid Protein, Max S. Hopkins, Shweta Kailasan, Allison Cohen, Simon Roux, Amelia E. Shevenell, Mavis Agbandje-McKenna, and Mya Breitbart

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An Undocumented Water Column Sink for Cadmium in Open Ocean Oxygen-Deficient Zones, David J. Janssen, Tim M. Conway, Seth G. John, James R. Christian, Dennis I. Kramer, Tom F. Pederson, and Jay T. Cullen

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Amazon River Water in the Northeastern Caribbean Sea and Its Effect on Larval Reef Fish Assemblages during April 2009, E. M. Johns, B. A. Muhling, R. C. Perez, Frank E. Muller-Karger, N. Melo, R. H. Smith, J. T. Lamkin, T. L. Gerard, and E. Malca

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A Role for Scavenging in the Marine Biogeochemical Cycling of Zinc and Zinc Isotopes, Seth G. John and Tim M. Conway

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A Rapid Response Study of the Hercules Gas Well Blowout, Samantha Joye, Joseph P. Montoya, Steven Murawski, Tamay Özgökmen, Terry L. Wade, Raffaele Montuoro, Brian J. Roberts, David Hollander, Wade H Jeffrey, and Jeffrey Chanton

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Silica Cycling in the Ultra-Oligotrophic Eastern Mediterranean Sea, M. D. Krom, N. Kress, and Kent A. Fanning Ph.D.

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Reef-Scale Thermal Stress Monitoring of Coral Ecosystems: New 5-km Global Products from NOAA Coral Reef Watch, Gang Liu, Scott F. Heron, C. Mark Eakin, Frank E. Muller-Karger, María Vega-Rodriguez, Liane S. Guild, Jacqueline L. De La Cour, Erick F. Geiger, William J. Skirving, Timothy F. R. Burgess, Alan E. Strong, Andy Harris, Eileen Maturi, Alexander Ignatov, John Sapper, Jianke Li, and Susan Lynds

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Assessment of CODAR Seasonde and WERA HF Radars in Mapping Surface Currents on the West Florida Shelf, Yonggang Liu, Robert H. Weisberg, and Clifford R. Merz

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Evaluation of Altimetry-Derived Surface Current Products Using Lagrangian Drifter Trajectories in the Eastern Gulf of Mexico, Yonggang Liu, Robert H. Weisberg, Stefano Vignudelli, and Gary T. Mitchum

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Cambios Espaciales y Estacionales en la Hidrografía y Bioquímica de la Región de la Fosa de Cariaco, Laura Lorenzoni, Ramon Varela, Digna T. Rueda-Roa, Frank Muller-Karger, Jaimie Rojas, Laurencia Guzmán, Yrene Astor, and Enrique Montes

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A Probabilistic Representation of Fish Diet Compositions from Multiple Data Sources: A Gulf of Mexico Case Study, M. Masi, Cameron Ainsworth, and D. Chagaris

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Comparative Metagenomics: Natural Populations of Induced Prophages Demonstrate Highly Unique, Lower Diversity Viral Sequences, Lauren McDaniel, Karyna Rosario, Mya Breitbart, and John Paul

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Assessing Climate Variability Effects on Dengue Incidence in San Juan, Puerto Rico, Pablo Méndez-Lázaro, Frank E. Muller-Karger, Daniel Otis, Matthew J McCarthy, and Marisol Peña-Orellana

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Microalgae (Diatom) Production — The Aquaculture and Biofuel Nexus, Clifford R. Merz and Kevan L. Main

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Alteration of Residual Circulation Due to Large-Scale Infrastructure in a Coastal Plain Estuary, Steven D. Meyers, Amanda J. Linville, and Mark E. Luther

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Real‐Time Oceanographic Data: From Safety to Science, Steven D. Meyers, Jeffrey Scudder, and Mark E. Luther

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A Framework for a Marine Biodiversity Observing Network Within Changing Continental Shelf Seascapes, Frank E. Muller-Karger, M. T. Kavanaugh, Enrique Montes, W. M. Balch, Mya Breitbart, F. Chavez, S. C. Doney, E. M. Johns, R. M. Letelier, M. W. Lomas, H. M. Sosik, and A. White

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A Framework for a Marine Biodiversity Observing Network Within Changing Continental Shelf Seascapes, Frank Muller-Karger, Maria Kavanaugh, Enrique Montes, William Balch, and Mya Breitbart

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Prevalence of External Skin Lesions and Polycyclic Aromatic Hydrocarbon Concentrations in Gulf of Mexico Fishes, Post-Deepwater Horizon, Steven Murawski, William T. Hogarth, Ernst B. Peebles, and Luiz Barbeiri

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Spatial Variability of Total Dissolved Copper and Copper Speciation in the Inshore Waters of Bermuda, Véronique Oldham, M. M. Swenson, and Kristen N. Buck

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Contrasting Responses of Coral Reef Fauna and Foraminiferal Assemblages to Human Influence in La Parguera, Puerto Rico, L. M. Oliver, W. S. Fisher, J. Dittmar, Pamela Hallock, J. Campbell, R. L. Quarles, P. Harris, and C. LoBue

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Comparisons of Different Ensemble Schemes for Glider Data Assimilation on West Florida Shelf, Chudong Pan, Lianyuan Zheng, Robert H. Weisberg, Yonggang Liu, and Chad Lembke

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Response to Comment on “Toxicity and Mutagenicity of Gulf of Mexico Waters During and After the Deepwater Horizon Oil Spill”, John H. Paul

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Chlorophyll-A Patterns and Mixing Processes in the Yucatan Basin, Caribbean Sea [Patrones Superficiales De La Clorofila a Y Procesos De Mezcla En La Cuenca De Yucatán, Mar Caribe], I. Pérez-Santos, W. Schneider, A. Valle-Levinson, J. Garcés-Vargas, I. Soto, R. Montoya-Sánchez, N. M. González, and Frank E. Muller-Karger

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RNA Viral Metagenome of Whiteflies Leads to the Discovery and Characterization of a Whitefly-Transmitted Carlavirus in North America, Karyna Rosario, Heather Capobianco, Terry Fei Fan Ng, Mya Breitbart, and Jane E. Polston

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Chemical Toxicity on Coral Reefs: Bioassay Protocols Utilizing Benthic Foraminifers, Benjamin J. Ross

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A Record of Anthropogenic Effects on Sedimentation in the Manatee River, Florida, Patrick Schwing and Ashanti Johnson

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Characterizing the Deep Sea Benthic Foraminifera Impact and Response to the Deepwater Horizon Blowout in the Northeastern Gulf of Mexico, Patrick Schwing, Isabel Romero, Gregg R. Brooks, David Hastings, Rebecca Larson, and David Hollander

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Characterizing the Impact and Response of Deep Sea Benthic Foraminifera to the Deepwater Horizon Event in the Northeastern Gulf of Mexico, Patrick Schwing, Isabel C. Romero, Gregg Brooks, David W. Hastings, Rebekka Larson, L. M. Reilly, David J. Hollander, and Jeff P. Chanton

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Interannual and Subdecadal Variability in the Nutrient Geochemistry of the Cariaco Basin, M. I. Scranton, G. T. Taylor, R. Thunell, C. R. Benitez-Nelson, Frank E. Muller-Karger, Kent Fanning, Laura Lorenzoni, Enrique Montes, R. Varela, and Y. Astor

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On the Consistency of MODIS Chlorophyll $a$ Products in the Northern South China Sea, S. L. Shang, Q. Dong, Chuanmin M. Hu, G. Lin, Y. H. Li, and S. P. Shang

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A Case Study of Enteric Virus Removal and Insights into the Associated Risk of Water Reuse for Two Wastewater Treatment Pond Systems in Bolivia, E. M. Symonds, M. E. Verbyla, J. O. Lukasik, R. C. Kafle, Mya Breitbart, and J. R. Mihelcic

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Consistency of the Current Global Ocean Observing Systems from an Argo perspective, K. von Schuckmann, J.-B. Sallée, D. Chambers, P.-Y. Le Traon, C. Cabanes, F. Gaillard, S. Speich, and M. Hamon

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Rapid Changes in the Seasonal Sea Level Cycle along the US Gulf Coast from the Late 20th Century, Thomas Wahl, Francisco M. Calafat, and Mark E. Luther

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Stable Isotopes in Fish Eye Lenses as Potential Recorders of Trophic and Geographic History, Amy A. Wallace, David J. Hollander, and Ernst B. Peebles

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Fish eye-lens stable isotopes from the eastern Gulf of Mexico, summer 2013, Amy A. Wallace and Ernst B. Peebles

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Fish Sound Production in the Presence of Harmful Algal Blooms in the Eastern Gulf of Mexico, Carrie C. Wall, Chad Lembke, Chuanmin Hu, and David A. Mann

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Temporal and Spatial Mapping of Red Grouper Epinephelus morio Sound Production, C. C. Wall, P. Simard, M. Lindemuth, Chad Lembke, D. F. Naar, Chuanmin Hu, Brian B. Barnes, Frank E. Muller-Karger, and D. A. Mann

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Why No Red Tide Was Observed on the West Florida Continental Shelf in 2010, Robert H. Weisberg, Lianyuan Zheng, Yonggang Liu, Chad Lembke, Jason M. Lenes, and John J. Walsh

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Gag Grouper Larvae Pathways on the West Florida Shelf, Robert H. Weisberg, Lianyuan Zheng, and Ernst B. Peebles

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Synoptic Volumetric Variations and Flushing of the Tampa Bay Estuary, M. Wilson, Steven D. Meyers, and Mark E. Luther

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Exploring the Potential of Optical Remote Sensing for Oil Spill Detection in Shallow Coastal Waters--A Case Study in the Arabian Gulf, Jun Zhao, Marouane Temimi, Hosni Ghedira, and Chuanmin Hu

Submissions from 2013

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Interannual Variability in Sea Surface Temperature and Fco2 Changes in the Cariaco Basin, Y. M. Astor, Laura Lorenzoni, R. Thunell, R. Varela, Frank E. Muller-Karger, L. Troccoli, G. T. Taylor, M. I. Scranton, E. Tappa, and Digna Rueda

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Climate Impacts on Zooplankton Population Dynamics in Coastal Marine Ecosystems, Harold P. Batchelder, Kendra L. Daly, Cabell S. Davis, Rubao Ji, Mark D. Ohman, William T. Peterson, and Jeffrey A. Runge

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Eddy Forced Variations in On- and Off-Margin Summertime Circulation along the 1000-M Isobath of the Northern Gulf of Mexico, 2000-2003, and Links with Sperm Whale Distributions along the Middle Slope, D. C. Biggs, A. E. Jochens, M. K. Howard, S. F. Dimarco, K. D. Mullin, R. Leben, Frank E. Muller-Karger, and C. Hu

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Clay Mineralogy of Surface Sediments as a Tool for Deciphering River Contributions to the Cariaco Basin (Venezuela), V. Bout-Roumazeilles, A. Riboulleau, E. Armynot Du Châtelet, Laura Lorenzoni, N. Tribovillard, R. W. Murray, Frank E. Muller-Karger, and Y. M. Astor

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Sources of Strong Copper-binding Ligands in Antarctic Peninsula Surface Waters, Randelle Bundy, Katherine Barbeau, and Kristen N. Buck

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On the Accuracy of SeaWiFS Ocean Color Data Products on the West Florida Shelf, Jennifer P. Cannizzaro, Chuanmin Hu, Kendall L. Carder, Christopher R. Kelble, Nelson Melo, Elizabeth M. Johns, Gabriel A. Vargo, and Cynthia A. Heil

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Sea Change: Charting the Course for Biogeochemical Ocean Time-Series Research in a New Millennium, M. J. Church, M. W. Lomas, and Frank E. Muller-Karger

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A New Method for Precise Determination of Iron, Zinc and Cadmium Stable Isotope Ratios in Seawater by Double-Spike Mass Spectrometry, Tim M. Conway, Angela D. Rosenberg, Jess F. Adkins, and Seth G. John

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High Global Diversity of Cycloviruses Amongst Dragonflies, Anisha Dayaram, Kristen Potter, Angela Moline, Dana Rosenstein, Milen Marinov, John Thomas, Mya Breitbart, Karyna Rosario, Gerardo Argüello-Astorga, and Arvind Varsani

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Generalized Additive Models used to Predict Species Abundance in the Gulf of Mexico: An Ecosystem Modeling Tool, Michael Drexler and Cameron H. Ainsworth

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Molecular and Microscopic Evidence of Viruses in Marine Copepods, Darren Dunlap, Terry Fei Fan Ng, Karyna Rosario, Jorge Barbosa, Anthony Greco, Mya Breitbart, and Ian Hewson

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A Bioinformatic Analysis of Ribonucleotide Reductase Genes in Phage Genomes and Metagenomes, Bhakti Dwivedi, Bingjie Xue, Daniel Lundin, Robert Edwards, and Mya Breitbart

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Metagenomic Identification, Seasonal Dynamics, and Potential Transmission Mechanisms of a Daphnia‐associated Single‐stranded DNA Virus in Two Temperate Lakes, Ian Hewson, Gabriel Ng, WenFang Li, Brenna LaBarre, Isabel Aguirre, Mya Breitbart, and Anthony Greco

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Distinct Iron Isotopic Signatures and Supply from Marine Sediment Dissolution, William B. Homoky, Seth G. John, Tim M. Conway, and Rachel A. Mills

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Gulf of Mexico Hurricane Wave Simulations Using Swan: Bulk Formula-Based Drag Coefficient Sensitivity for Hurricane Ike, Yong Huang, Robert H. Weisberg, Lianyuan Zheng, and Marcel Zijlema

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Uncertainties of SeaWiFS and MODIS Remote Sensing Reflectance: Implications from Clear Water Measurements, Chuanmin M. Hu, Lian Feng, and ZhongPing Lee

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The Role of Organic Ligands in Iron Cycling and Primary Productivity in the Antarctic Peninsula: A Modeling Study, Mingshun Jiang, Katherine Barbeau, Karen Selph, Christopher Measures, Kristen N. Buck, Farooq Azam, B. Greg Mitchell, and Meng Zhou

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Responses of Foraminiferal Assemblages to Enso Climate Patterns on Bank Reefs of Northern Bahia, Brazil: A 17-Year Record, Francisco Kelmo and Pamela Hallock

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U.S. IOOS Coastal and Ocean Modeling Testbed: Inter-Model Evaluation of Tides, Waves, and Hurricane Surge in the Gulf of Mexico, P. C. Kerr, A. S. Donahue, J. J. Westerink, R. A. Luettich Jr., Lianyuan Zheng, Robert H. Weisberg, and Y. Huang

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Evaluation of Chlorophyll-A Remote Sensing Algorithms for an Optically Complex Estuary, C. Le, C. Hu, Jennifer Cannizzaro, D. English, Frank E. Muller-Karger, and Z. Lee

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Development and Sea Trials of a New Camera-Based Assessment Survey System for Reef Fish Stocks Assessment, Chad Lembke, Alex Silverman, Steven Butcher, Steven Murawski, Sarah Grasty, and Xianpeng Shi

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Simulating Cell Death in the Termination of Karenia brevis Blooms: Implications for Predicting Aerosol Toxicity Vectors to Humans, Jason M. Lenes, J. J. Walsh, and Brian P. Darrow

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Sparse Glider Datasets: A Case Study for NoSQL Databases, Michael Lindemuth and Chad Lembke

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Monitoring and Modeling the Deepwater Horizon Oil Spill: a Record Breaking Enterprise, Yonggang Liu, Amy Macfadyen, Zhen-Gang Ji, and Robert H. Weisberg

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Spatial and Seasonal Variability of Dissolved Organic Matter in the Cariaco Basin, Laura Lorenzoni, G. T. Taylor, C. Benitez-Nelson, D. A. Hansell, Enrique Montes, R. Masserini, Kent Fanning, R. Varela, Y. Astor, L. Guzmán, and Frank E. Muller-Karger

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Verification of Wave Measurement Systems, Luther Luthe, Guy Meadows, Earle Buckley, Sherryl Gilbert, Heidi Purcell, and Mario Tamburri