This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

Follow

Submissions from 2012

Link

A 1-D Simulation Analysis of the Development and Maintenance of the 2001 Red Tide of the Ichthyotoxic Dinoflagellate Karenia Brevis on the West Florida Shelf, Jason M. Lenes, Brian P. Darrow, John J. Walsh, J. K. Jolliff, F. R. Chen, Robert H. Weisberg, and Lianyuan Zheng

Link

Varying Mesoscale Structures Influence Larval Fish Distribution in the Northern Gulf of Mexico, D. Lindo-Atichati, F. Bringas, G. Goni, B. Muhling, Frank E. Muller-Karger, and S. Habtes

Link

Seasonal Variability on the West Florida Shelf, Yonggang Liu and Robert H. Weisberg

Link

Comparison of the X-Track Altimetry Estimated Currents with Moored Adcp and Hf Radar Observations on the West Florida Shelf, Yonggang Liu, Robert H. Weisberg, Stefano Vignudelli, Laurent Roblou, and Clifford R. Merz

Link

Potential Role of Event-Driven Sediment Transport on Sediment Accumulation in the Cariaco Basin, Venezuela, Laura Lorenzoni, C. R. Benitez-Nelson, R. C. Thunell, D. Hollander, R. Varela, Y. Astor, F. A. Audemard, and Frank E. Muller-Karger

PDF

Phytoplankton Responses to Atmospheric Metal Deposition in the Coastal and Open-ocean Sargasso Sea, Katherine Mackey, Kristen N. Buck, John Casey, Abigail Cid, Michael Lomas, Yoshiki Sohrin, and Adina Paytan

PDF

Salinity Gradient Power (SGP): A Developmental Roadmap Covering Existing Generation Technologies and Recent Investigative Results into the Feasibility of Bipolar Membrane-Based Salinity Gradient Power Generation, Clifford R. Merz, Wilfrido A. Moreno, Marilyn Barger, and Stephen M. Lipka

Link

Evolution of the USF/CMS Codar and WERA HF Radar Network, Clifford R. Merz, Robert H. Weisberg, and Yonggang Liu

Link

Vertical Fluxes of Particulate Biogenic Material through the Euphotic and Twilight Zones in the Cariaco Basin, Venezuela, Enrique Montes, Frank E. Muller-Karger, R. Thunell, D. Hollander, Y. Astor, R. Varela, I. Soto, and Laura Lorenzoni

Link

Mesophotic Coral Buildups in a Prodelta Setting (Late Eocene, Southern Pyrenees, Spain): a Mixed Carbonate-Siliciclastic System, Michele Morsilli, Francesca R. Bosellini, Luis Pomar, Pamela Hallock, Marc Aurell, and Cesare A. Papazzoni

Link

Overlap between Atlantic Bluefin Tuna Spawning Grounds and Observed Deepwater Horizon Surface Oil in the Northern Gulf of Mexico, B. A. Muhling, M. A. Roffer, J. T. Lamkin, G. W. Ingram, M. Upton, G. Gawlikowski, Frank E. Muller-Karger, S. Habtes, and W. J. Richards

Link

Developing Integrated Models of Southern Ocean Food Webs: Including Ecological Complexity, Accounting for Uncertainty and the Importance of Scale, E. J. Murphy, R. D. Cavanaugh, E. E. Hofmann, S. L. Hill, A. J. Constable, D. P. Costa, M. H. Pinkerton, N. M. Johnston, P. N. Trathan, J. M. Klinck, D. A. Wolf-Gladrow, Kendra L. Daly, O. Maury, and S. C. Donney

Link

Spatially Resolved Genomic, Stable Isotopic, and Lipid Analyses of a Modern Freshwater Microbialite from Cuatro Ciénegas, Mexico, Nitti Nitti, Camille Daniels, Janet Siefert, Valeria Souza, David Hollander, and Mya Breitbart

Link

Ocean Time-series Reveals Recurring Seasonal Patterns of Virioplankton Dynamics in the Northwestern Sargasso Sea, Rachel Parsons, Mya Breitbart, Michael Lomas, and Craig Carlson

Link

Internal Waves, an Under-Explored Source of Turbulence Events in the Sedimentary Record, L. Pomar, M. Morsili, Pamela Hallock, and B. Bádenas

Link

Diverse Circular ssDNA Viruses Discovered in Dragonflies (Odonata: Epiprocta), Karyna Rosario, Anisha Dayaram, Milen Marinov, Jessica Ware, Simona Kraberger, Daisy Stainton, Mya Breitbart, and Arvind Varsani

Link

A Field Guide to Eukaryotic Circular Single-stranded DNA Viruses: Insights Gained from Metagenomics, Karyna Rosario, Siobain Duffy, and Mya Breitbart

Link

A National Glider Network for Sustained Observation of the Coastal Ocean, Daniel L. Rudnick, Rebecca Baltes, Michael Crowley, Oscar Schofield, Craig M. Lee, and Chad Lembke

PDF

Improving Understanding of Organic Metal‐binding Ligands in the Ocean, Sylvia Sander, Kristen N. Buck, and Maeve Lohan

Link

Binational Collaboration to Study Gulf of Mexico'S Harmful Algae, I. Soto, Chuamin Hu, K. Steidinger, Frank E. Muller-Karger, Jennifer Cannizzaro, J. Wolny, S. Cerdeira-Estrada, E. Santamaria-Del-Angel, F. Tafoya-Del-Angel, P. Alvarez-Torres, J. Herrera Silveira, and J. Allen

Link

Ecosystem Responses in the Southern Caribbean Sea to Global Climate Change, G. T. Taylor, Frank E. Muller-Karger, R. C. Thunell, M. I. Scranton, Y. Astor, R. Varela, L. T. Ghinaglia, Laura Lorenzoni, Kent A. Fanning, S. Hameed, and O. Doherty

Link

Observations on the Life Cycle of the Symbiont-Bearing Foraminifer Amphistegina Lobifera Larsen, an Invasive Species in Coastal Ecosystems of the Aegean Sea (Greece, E. Mediterranean), Maria V. Triantaphyllou, Margarita D. Dimiza, Olga Koukousioura, and Pamela Hallock

Link

Shelf-Scale Mapping of Sound Production by Fishes in the Eastern Gulf of Mexico, using Autonomous Glider Technology, Carrie C. Wall, Chad Lembke, and David A. Mann

Link

A Critique of Alternative Power Generation for Florida by Mechanical and Solar Means, Robert H. Weisberg, Yonggang Liu, Clifford R. Merz, Jyotika I. Virmani, and Lianyuan Zheng

Link

Modeling the West Florida Coastal Ocean by Downscaling from the Deep Ocean, across the Continental Shelf and into the Estuaries, Lianyuan Zheng and Robert H. Weisberg

Submissions from 2011

Link

Thermocline Characterisation in the Cariaco Basin: a Modelling Study of the Thermocline Annual Variation and Its Relation with Winds and Chlorophyll-A Concentration, Aida Alvera-Azcarate, Alexander Barth, Robert H. Weisberg, J. J. Castañeda, L. Vandenbulcke, and J. M. Beckers

PDF

Running Head: Foram Assemblages from Three Substrata Comparison of Foraminiferal Assemblages from Three Kinds of Substrata, Durney Key, West-CentralFlorida, USA, K. Anderson and Pamela Hallock

Link

An Improved High-Resolution Sst Climatology to Assess Cold Water Events Off Florida, Brian B. Barnes, C. Hu, and Frank E. Muller-Karger

Link

Lipid Composition of Tropical and Subtropical Copepod Species of the Genus Rhincalanus (Copepoda: Eucalanidae): A Novel Fatty Acid and Alcohol Signature, Christine J. Cass, Stuart Wakeham, and Kendra L. Daly

Link

Directions in Biology for Ocean Observing, Kendra L. Daly

Link

Spatial Heterogeneity of Bacterial Communities in the Mucus of Montastraea annularis, Camille Daniels, Amy Zeifman, Kathy Heym, Kim Ritchie, Craig Watson, Ilze Berzins, and Mya Breitbart

Link

Detection of Anomalous Particles from the Deepwater Horizon Oil Spill Using the SIPPER3 Underwater Imaging Platform, Sergiy Fefilatyev, Kurt A. Kramer, Lawrence Hall, Dmitry Goldgof, Rangachar Katsuri, Andrew Walker Remsen, and Kendra L. Daly

Link

Development of phoH as a Novel Signature Gene for Assessing Marine Phage Diversity, Dawn Goldsmith, Giuseppe Crosti, Bhakti Dwivedi, Lauren McDaniel, Arvind Varsani, Curtis Suttle, Markus Weinbauer, Ruth-Anne Sandaa, and Mya Breitbart

Link

Foram Index, Pamela Hallock

Link

Foraminifera, Pamela Hallock

Link

Foraminifera are Useful Indicators of Environmental Conditions of Coral Reefs, Pamela Hallock

PDF

Observations of Brachygnathia Superior (Underbite) in Wild Ruminates in Western Montana, USA, J. A. Hoy, G. T. Haas, R. D. Hoy, and Pamela Hallock

PDF

Did the Northeastern Gulf of Mexico Become Greener after the Deepwater Horizon Spill?, Chuanmin Hu, Robert H. Weisberg, Yonggang Liu, Lianyuan Zheng, Kendra L. Daly, David C. English, Jun Zhao, and Gabriel A. Vargo

Link

Living Benthic Foraminifera as an Environmental Proxy in Coastal Ecosystems: A Case Study from the Aegean Sea (Greece, NE Mediterranean), Olga Koukousioura, Margarita D. Dimiza, Maria V. Triantaphyllou, and Pamela Hallock

Link

The Protection and Management of the Sargasso Sea: The Golden Floating Rainforest of the Atlantic Ocean, D.d’A. Laffoley, H.S.J. Roe, M.V. Angel, Ardron Ardron, Bates Bates, Boyd Boyd, Brooke Brooke, and Kristen N. Buck

Link

Front Matter, Yonggang Liu, Amy Macfadyen, Zhen-Gang Ji, and Robert H. Weisberg

Link

Introduction to Monitoring and Modeling the Deepwater Horizon Oil Spill, Yonggang Liu, Amy Macfadyen, Zhen-Gang Ji, and Robert H. Weisberg

PDF

A Review of Self-Organizing Map Applications in Meteorology and Oceanography, Yonggang Liu and Robert H. Weisberg

PDF

Evaluation of Trajectory Modeling in Different Dynamic Regions Using Normalized Cumulative Lagrangian Separation, Yonggang Liu and Robert H. Weisberg

Link

Evolution of the Loop Current System during the Deepwater Horizon Oil Spill Event as Observed with Drifters and Satellites, Yonggang Liu, Robert H. Weisberg, Chuanmin Hu, Charles C. Kovach, and Rolf R. Riethmüller

Link

Combining Numerical Ocean Circulation Models with Satellite Observations in a Trajectory Forecast System: a Rapid Response to the Deepwater Horizon Oil Spill, Yonggang Liu, Robert H. Weisberg, Chuanmin Hu, and Lianyuan Zheng

Link

Satellites, Models Combine to Track Deepwater Horizon Oil Spill, Yonggang Liu, Robert H. Weisberg, Chuanmin Hu, and Lianyuan Zheng

PDF

Tracking the Deepwater Horizon Oil Spill: a Modeling Perspective, Yonggang Liu, Robert H. Weisberg, Chuanmin Hu, and Lianyuan Zheng

Link

Trajectory Forecast as a Rapid Response to the Deepwater Horizon Oil Spill, Yonggang Liu, Robert H. Weisberg, Chuanmin Hu, and Lianyuan Zheng

Link

Bio-Optical Characteristics of Cariaco Basin (Caribbean Sea) Waters, Laura Lorenzoni, C. Hu, R. Varela, G. Arias, L. Guzmán, and Frank E. Muller-Karger

Link

The Zooplankton of Marguerite Bay, Western Antarctic Peninsula—Part I: Abundance, Distribution, and Population Response to Variability in Environmental Conditions, Marina Marrari, Kendra L. Daly, Alexander Timonin, and Tatjana Semenova

Link

The Zooplankton of Marguerite Bay, Western Antarctic Peninsula—Part II: Vertical Distributions and Habitat Partitioning, Marina Marrari, Kendra L. Daly, Alexander Timonin, and Tatjana Semenova

PDF

Severe 2010 Cold-Water Event Caused Unprecedented Mortality to Corals of the Florida Reef Tract and Reversed Previous Survivorship Patterns, Frank E. Muller-Karger, Brian B. Barnes, and Digna Rueda

Link

Chlorophyll Variability in the Northeastern Gulf of Mexico, B. Nababan, Frank E. Muller-Karger, C. Hu, and D. C. Biggs

PDF

Exploring the Diversity of Plant DNA Viruses and Their Satellites Using Vector-Enabled Metagenomics on Whiteflies, Terry Fei Fan Ng, Siobain Duffy, Jane Polston, Elise Bixby, Gary Vallad, and Mya Breitbart

Link

Metagenomic Identification of a Novel Anellovirus in Pacific Harbor Seal (Phoca vitulina richardsii) Lung Samples and its Detection in Samples from Multiple Years, Terry Fei Fan Ng, Elizabeth Wheeler, Denise Greig, Thomas Waltzek, Frances Gulland, and Mya Breitbart

PDF

Broad Surveys of DNA Viral Diversity Obtained through Viral Metagenomics of Mosquitoes, Terry Fei Fan Ng, Dana Willner, Yan Wei Lim, Robert Schmieder, Betty Chau, Christina Nilsson, Simon Anthony, Yijun Ruan, Forest Rohwer, and Mya Breitbart

Link

Exploring the Viral World Through Metagenomics, Karyna Rosario and Mya Breitbart

Link

Dragonfly Cyclovirus, a Novel Single-stranded DNA Virus Discovered in Dragonflies (Odonata: Anisoptera), Karyna Rosario, Milen Marinov, Daisy Stainton, Simona Kraberger, Elizabeth Wiltshire, David Collings, Matthew Walters, Darren Martin, Mya Breitbart, and Arvind Varsani

Link

Comparative Metagenomics of Microbial Traits Within Oceanic Viral Communities, Itai Sharon, Natalia Battchikova, Eva-Mari Aro, Carmela Giglione, Thierry Meinnel, Fabian Glaser, Ron Pinter, Mya Breitbart, Forest Rohwer, and Oded Be ́ja

Link

A Regional Testbed for Storm Surge and Coastal Inundation Models - an Overview, Y. P. Sheng, Justin R. Davis, Renato Figueiredo, Bin Liu, Huiqing Liu, Rick Luettich, Vladimir A. Paramygin, Robert Weaver, Robert H. Weisberg, Lian Xie, and Lianyuan Zheng

Link

Holocene Southern Ocean Surface Temperature Variability West of the Antarctic Peninsula, Amelia E. Shevenell, A. E. Ingalls, E. W. Domack, and C. Kelly

Link

Diversity of Virus–host Systems in Hypersaline Lake Retba, Senegal, Télesphore Sime‐Ngando, Soizick Lucas, Agnès Robin, Kimberly Pause Tucker, Jonathan Colombet, Yvan Bettarel, Elie Desmond, Simonetta Gribaldo, Patrick Forterre, Mya Breitbart, and David Prangishvili

PDF

Phage Encoded H-NS: A Potential Achilles Heel in the Bacterial Defence System, Connor Skennerton, Florent Angly, Mya Breitbart, Lauren Bragg, Shaomei He, Katherine McMahon, Philip Hugenholtz, and Gene Tyson

PDF

Sea Surface Temperature Variability in the Florida Keys and Its Relationship to Coral Cover, I. M. Soto, Frank E. Muller-Karger, Pamela Hallock, and C. Hu

Link

Closed ranks in Oceanography, LuAnne Thompson, Renellys C. Perez, and Amelia E. Shevenell

Link

Reply to 'Not Just Family Matters', LuAnne Thompson, Renellys C. Perez, and Amelia E. Shevenell

Link

Diversity and Distribution of Single-stranded DNA Phages in the North Atlantic Ocean, Kimberly Tucker, Rachel Parsons, Erin Symonds, and Mya Breitbart

Link

Photosynthesis and Respiration in Five Species of Benthic Foraminifera that Host Algal Endosymbionts, Robert A. Walker, Pamela Hallock, Joseph J. Torres, and Gabriel A. Vargo

Link

Imprudent Fishing Harvests and Consequent Trophic Cascades on the West Florida Shelf Over the Last Half Century: a Harbinger of Increased Human Deaths from Paralytic Shellfish Poisoning along the Southeastern United States, in Response to Oligotrophication?, John J. Walsh, C. R. Thomas, K. A. Steidinger, J. M. Lenes, F. R. Chen, Robert H. Weisberg, Lianyuan Zheng, J. H. Landsberg, Gabriel A. Vargo, and C. A. Heil

Link

Coastal Ocean Pollution, Water Quality, and Ecology, Robert H. Weisberg

Link

Shoreline Changes in West-Central Florida between 1987 and 2008 from Landsat Observations, K. Yu, C. Hu, Frank E. Muller-Karger, D. Lu, and I. Soto

Submissions from 2010

Link

In Situ Nutrient Sensors for Ocean Observing Systems, Lori Adornato, Andres Cardenas-Valencia, Eric Kaltenbacher, Robert H. Byrne, Kendra L. Daly, Kate Larkin, Sue Hartman, Matt Mowlem, Ralf D. Prien, and Veronique Garcon

PDF

Transposases Are the Most Abundant, Most Ubiquitous Genes in Nature, Ramy Aziz, Mya Breitbart, and Robert Edwards

Link

Iron-binding Ligand Production and Copper Speciation in an Incubation Experiment of Antarctic Peninsula Shelf Waters From the Bransfield Strait, Southern Ocean, Kristen N. Buck, Karen Selph, and Katherine Barbeau

Link

Partitioning of Food Resources in Bathypelagic Micronekton in the Eastern Gulf of Mexico, Scott E. Burghart, Thomas L. Hopkins, and Joseph J. Torres

PDF

Ocean Mass from GRACE and Glacial Isostatic Adjustment, D. Chambers, John Wahr, Mark E. Tamisea, and R Steven Nerem

PDF

A Global Evaluation of Ocean Bottom Pressure from GRACE, OMCT, and Steric-Corrected Altimetry, D. Chambers and Josh K. Willis

Link

Short-Term Variability of Suspended Sediment and Phytoplankton in Tampa Bay, Florida: Observations from a Coastal Oceanographic Tower and Ocean Color Satellites, Zhiqiang Chen, Chuanmin M. Hu, Frank E. Muller-Karger, and Mark E. Luther

Link

Short-Term Variability of Suspended Sediment and Phytoplankton in Tampa Bay, Florida: Observations from a Coastal Oceanographic Tower and Ocean Color Satellites, Z. Chen, C. Hu, Frank E. Muller-Karger, and E. E. Luther

Link

A Preliminary Carbon Budget for the Gulf of Mexico, Paula G. Coble, Lisa L. Robbins, Kendra L. Daly, Wei-Jun Cai, Katja Fennel, and Steven E. Lorenz

Link

Low Oxygen Regions in the Oceans, Kendra L. Daly, Francis Chan, and Nancy Rabalais

Link

Nickel Utilization in Phytoplankton Assemblages From Contrasting Oceanic Regimes, Christopher Dupont, Kristen N. Buck, Brian Palenik, and Katherine Barbeau

Link

Ecological Impacts of the 2005 Red Tide on Artificial Reef Epibenthic Macroinvertebrate and Fish Communities in the Eastern Gulf of Mexico, Jennifer M. Dupont, Pamela Hallock-Muller, and Walter C. Jaap

PDF

Monitoring Coral Reefs from Space, C. M. Eakin, C. J. Nim, R. E. Brainard, C. Aubrecht, C. Elvidge, D. K. Gledhill, Frank E. Muller-Karger, P. J. Mumby, W. J. Skirving, A. E. Strong, M. Wang, S. Weeks, F. Wentz, and D. Ziskin

PDF

West Florida Shelf: A Natural Laboratory for the Study of Ocean Acidification, Pamela Hallock, Lisa L. Robbins, Rebekka Larson, Tanya Beck, Patrick Schwing, Michael Martínez-Colón, and Brad Gooch

Link

Lagrangian Particle Tracking of a Toxic Dinoflagellate Bloom within the Tampa Bay Estuary, Heather Havens, Mark E. Luther, Steven D. Meyers, and Cynthia A. Heil

PDF

Coupling of Surge and Waves for an Ivan-like Hurricane Impacting the Tampa Bay, Florida Region, Yong Huang, Robert H. Weisberg, and Lianyuan Zheng

Link

Remote Detection of Trichodesmium Blooms in Optically Complex Coastal Waters: Examples with Modis Full-Spectral Data, C. Hu, Jennifer Cannizzaro, Kendall L. Carder, Frank E. Muller-Karger, and R. Hardy

PDF

Moderate Resolution Imaging Spectroradiometer (MODIS) Observations of Cyanobacteria Blooms in Taihu Lake, China, Chuanmin Hu, Zhongping Lee, Ronghua Ma, Kun Yu, Daqiu Li, and Shaoling Shang

PDF

On the Recurrent Ulva prolifera Blooms in the Yellow Sea and East China Sea, Chuanmin Hu, Daqiu Li, Changsheng Chen, Jianzhong Ge, Frank E. Muller-Karger, Junpeng Liu, Feng Yu, and Ming-Xia He

PDF

Hydrological and Oceanic Effects on Polar Motion from GRACE and Models, Shaunggen Jin, Don Chambers, and Byron D. Tapley

PDF

Time Series of Bio-Optical Properties in a Subtropical Gyre: Implications for the Evaluation of Interannual Trends of Biogeochemical Properties, ZhongPing Lee, Shaoling Shang, Chuanmin Hu, Marlon Lewis, Robert Arnone, Yonghong Li, and Bertrand Lubac

Link

HF Radar Performance in a Low-Energy Environment: CODAR SeaSonde Experience on the West Florida Shelf, Yonggang Liu, Robert H. Weisberg, and Clifford R. Merz

Link

Preliminary Survey on Foraminiferal Responses to Pollutants in Torrecillas Lagoon Puerto Rico, Michael Martínez-Colón and Pamela Hallock

Link

Local and Regional Geochemical Signatures of Surface Sediments from the Cariaco Basin and Orinoco Delta, Venezuela, N. C. Martinez, R. W. Murray, R. C. Thunell, L. C. Peterson, Frank E. Muller-Karger, Laura Lorenzoni, Y. Astor, and R. Varela

Link

Using the Surface Reflectance Modis Terra Product to Estimate Turbidity in Tampa Bay, Florida, M. J. Moreno-Madrinan, M. Z. Al-Hamdan, D. L. Rickman, and Frank E. Muller-Karger

Link

The Cariaco Basin: CARIACO Oceanographic Time Series, Frank Muller-Karger, Ramon Varela, Robert Thunell, Mary I. Scranton, Gordon Taylor, Yrene Astor, Claudia Benitez-Nelson, Laura Lorenzoni, Eric Tappa, Miguel A. Goñi, Digna T. Rueda-Roa, and Chuanmin Hu

Link

Estimating Mean Sea Level Change from the TOPEX and Jason Altimeter Missions, R. S. Nerem, Don P. Chambers, C. Choe, and Gary T. Mitchum

Link

Viral and Microbial Community Dynamics in Four Aquatic Environments, Beltran Rodriguez-Brito, LinLin Li, Linda Wegley, Mike Furlan, Florent Angly, Mya Breitbart, John Buchanan, Christelle Desnues, Elizabeth Dinsdale, and Robert Edwards