This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2007

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The Physicochemical Speciation of Dissolved Iron in the Bering Sea, Alaska, Kristen N. Buck and Kenneth W. Bruland

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Dissolved Iron Speciation in Two Distinct River Plumes and an Estuary: Implications for Riverine Iron Supply, Kristen N. Buck, Maeve Lohan, Carolyn J. M. Berger, and Kenneth W. Bruland

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A Review of Total Dissolved Copper and Its Chemical Speciation in San Francisco Bay, California, Kristen N. Buck, John R.M. Ross, A. Russell Flegal, and Kenneth W. Bruland

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Gravimetric Methods – Spacecraft Altimeter Measurements, Don P. Chambers

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Effects of Ice Melting on GRACE Observations of Ocean Mass Trends, Don P. Chambers, Mark E. Tamisiea, R Steven Nerem, and John C. Ries

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Reconstructing Twentieth-Century Sea Surface Temperature Variability in the Southwest Pacific: A Replication Study Using Multiple Coral Sr/Ca Records from New Caledonia, Kristine L. DeLong, Terrence M. Quinn, and Frederick W. Taylor

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Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil, Noah Fierer, Mya Breitbart, James Nulton, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, and Robert Jackson

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Lesion Regeneration Rates in Reef-Building Corals Montastraea spp. as Indicators of Colony Condition, Elizabeth M. Fisher, John E. Fauth, Pamela Hallock-Muller, and Cheryl M. Woodley

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Satellite-Derived Surface Current Divergence in Relation to Tropical Atlantic SST and Wind, Robert W. Helber, Robert H. Weisberg, Fabrice Bonjean, Eric S. Johnson, and Gary S. Lagerloef

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Developing Standards for Dissolved Iron in Seawater, Kenneth Johnson, Virginia Elrod, Steve Fitzwater, Joshua Plant, Edward Boyle, Bridget Bergquist, and Kristen N. Buck

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Power Law Rank–abundance Models for Marine Phage Communities, Karl Heinz Karl, Beltran Rodriguez-Brito, Mya Breitbart, David Bangor, Florent Angly, Ben Felts, James Nulton, Forest Rohwer, and Peter Salamon

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Euphotic Zone Depth: Its Derivation and Implication to Ocean-Color Remote Sensing, ZhongPing Lee, Alan Weidemann, John Kindle, Robert Arnone, Kendall L. Carder, and Curtiss Davis

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Rectification of the Bias in the Wavelet Power Spectrum, Yonggang Liu, X. San Liang, and Robert H. Weisberg

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Ocean Currents and Sea Surface Heights Estimated Across the West Florida Shelf, Yonggang Liu and Robert H. Weisberg

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Current Patterns on the West Florida Shelf from Joint Self-Organizing Map Analyses of Hf Radar and Adcp Data, Yonggang Liu, Robert H. Weisberg, and Lynn K. Shay

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Macroarray Analysis of Gene Expression in a Marine Pseudotemperate Bacteriophage, Amy Long, Stacey S. Patterson, and John H. Paul

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Water Level Observations for Storm Surge, Mark E. Luther, Clifford Ronald Merz, Jeffrey Scudder, Stephen R. Baig, Jennifer Pralgo, Stephen Gill, and Gerald Hovis

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On the Attraction of Larval Fishes to Reef Sounds, David A. Mann, Brandon M. Casper, Kelly S. Boyle, and Timothy C. Tricas

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Velocity Comparisons from Upward and Downward Acoustic Doppler Current Profilers on the West Florida Shelf, Dennis A. Mayer, Jyotika I. Virmani, and Robert H. Weisberg

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Development of a Self-Contained, Satellite Based, Moored Surface Buoy Position Tracking Device, Clifford R. Merz, Robert H. Weisberg, Patrick A. Smith, Jason A. Law, Jeff Donovan, Graham M. Tilbury, Chad Lembke, and Douglass Myhre

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A Numerical Simulation of Residual Circulation in Tampa Bay. Part I: Low-frequency Temporal Variations, Steven D. Meyers, Mark E. Luther, Monica Wison, Heather Havens, Amanda Linville, and Kristin Sopkin

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Effect of Shoreline Meteorological Measurements on NOAA Buoy Model Prediction of Coastal Air–Sea Gas Transfer, Connie Mizak, Scott Campbell, Kristin Sopkin, Sherryl Gilbert, Mark E. Luther, and Noreen Poor

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Comment on “Estimating Future Sea Level Change from Past Records” by Nils-Axel Mörner, R. S. Nerem, A. Cazenave, Don Chambers, L. Fu, E. W. Leuliette, and Gary T. Mitchum

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Top-Down Control of Phytoplankton by Oysters in Chesapeake Bay, USA: Reply to Newell et al. (2007), Lawrence R. Pomeroy, Christopher F. D'Elia, and Linda C. Schaffner

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Progressive Dolomitization of Florida Limestone Recorded by Alkaline Earth Element Concentrations in Saline, Geothermal, Submarine Springs, Johan Schijf and Robert H. Byrne

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Validating a Biogeochemical Watershed Disturbance and Climate Change Proxy: Tampa Bay. FL, Patrick Schwing, E. Martinez, A. J. Pyrtle, and S. Haynes

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High-Frequency Radar Mapping of Surface Currents Using Wera, Lynn K. Shay, Jorge Martinez-Pedraja, Thomas M. Cook, Brian K. Haus, and Robert H. Weisberg

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Upper Ocean Response of the Mesoamerican Barrier Reef System to Hurricane Mitch and Coastal Freshwater Inputs: A Study Using Sea-Viewing Wide Field-Of-View Sensor (SEAWIFS) Ocean Color Data and a Nested-Grid Ocean Circulation Model, Jinyu Sheng, Liang Wang, Serge Andrefouet, Chuanmin Hu, Bruce G. Hatcher, Frank E. Muller-Karger, Bjoern Kjerfve, William D. Heyman, and Bo Yang

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Cenozoic Antarctic Cryosphere Evolution: Tales from Deep-Sea Sedimentary Records, Amelia E. Shevenell

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Orbital and Atmospheric Forcing of Western Antarctic Peninsula Climate in the Holocene: The TEX86 Paleotemperature Record of Palmer Deep, Amelia E. Shevenell, A. E. Ingalls, and E. W. Domack

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Modeling Air/Sea Flux Parameters in a Coastal Area: A Comparative Study of Results from the TOGA COARE Model and the NOAA Buoy Model, Kristin Sopkin, Connie Mizak, Sherryl Gilbert, Vembu Subramaniam, Mark E. Luther, and Noreen Poor

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Improvements in Data Management Practices Within West Florida Shelf Coastal Ocean Monitoring and Prediction System, Vembu Subramaniam, Jeff Donovan, Jeremy Atkins, Mark E. Luther, and Robert H. Weisberg

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Particulate Organic Carbon Fluxes Along Upwelling-Dominated Continental Margins: Rates and Mechanisms, Robert C. Thunell, Claudia Benitez-Nelson, Ramon Varela, Yrene Astor, and Frank E. Muller-Karger

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A High Resolution Satellite-only GRACE-based Mean Dynamic Topography of the South Atlantic Ocean, Marcio L. Vianna, Viviane V. Menezes, and D. Chambers

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An Optical Model for Heat and Salt Budget Estimation for Shallow Seas, Hari Warrior and Kendall L. Carder

Submissions from 2006

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The Marine Viromes of Four Oceanic Regions, Florent Angly, Ben Felts, Mya Breitbart, Peter Salamon, Robert Edwards, Craig Carlson, Amy Chan, Matthew Haynes, Scott Kelley, Hong Liu, Joseph Mahaffy, Jennifer Mueller, James Nulton, Robert Olson, Rachel Parsons, Steve Rayhawk, Curtis Suttle, and Forest Rohwer

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Cold Event in the South Atlantic Bight During Summer of 2003: Anomalous Hydrographic and Atmospheric Conditions, Alfredo Aretxabaleta, James R. Nelson, Jack O. Blanton, Harvey E. Seim, Francisco E. Werner, John M. Bane, and Robert H. Weisberg

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Widespread Occurrence of Phage-encoded Exotoxin Genes in Terrestrial and Aquatic Environments in Southern California, Veronica Casas, Jon Miyake, Heather Balsley, Julie Roark, Serena Telles, Steven Leeds, Ivan Zurita, Mya Breitbart, Doug Bartlett, Farooq Azam, and Forest Rohwer

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Evaluation of New GRACE Time-variable Gravity Data over the Ocean, Don P. Chambers

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Observing seasonal Steric Sea Level Variations with GRACE and Satellite Altimetry, Don P. Chambers

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Using Pyrosequencing to Shed Light on Deep Mine Microbial Ecology, Robert Edwards, Beltran Rodriguez-Brito, Linda Wegley, Matthew Haynes, Mya Breitbart, Dean Peterson, Martin Saar, Scott Alexander, E. Calvin Alexander Jr., and Forest Rohwer

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Laurentide Ice Sheet Meltwater and Abrupt Climate Change During the Last Glaciation, Heather W. Hill, Benjamin P. Flower, Terrence M. Quinn, David J. Hollander, and Thomas P. Guilderson

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Gene Diversity and Organization in rbcL-Containing Genome Fragments from Uncultivated Synechococcus in the Gulf of Mexico, David E. John, Boris Wawrik, F. Robert Tabita, and John H. Paul

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Role of Elevated Organic Carbon Levels and Microbial Activity in Coral Mortality, David Kline, Neilan Kuntz, Mya Breitbart, Nancy Knowlton, and Forest Rohwer

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Sea Surface Temperature Patterns on the West Florida Shelf Using Growing Hierarchical Self-Organizing Maps, Yonggang Liu, Robert H. Weisberg, and Ruoying He

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Performance Evaluation of the Self-Organizing Map for Feature Extraction, Yonggang Liu, Robert H. Weisberg, and Christopher N. K. Mooers

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Subcentennial-Scale Climatic and Hydrologic Variability in the Gulf of Mexico During the Early Holocene, Jenna M. LoDico, Benjamin P. Flower, and Terrence M. Quinn

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Iron Cycling Within the Columbia River Plume: The Role of Tidal Mixing and Upwelling, M. C. Lohan, Kristen N. Buck, C. J. Berger, A. M. Aguilar-Islas, B. Sohst, G. J. Smith, and K. W. Bruland

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Temperate and Lytic Cyanophages from the Gulf of Mexico, Lauren D. McDaniel, Michele delaRosa, and John H. Paul

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Limits to Top-Down Control of Phytoplankton by Oysters in Chesapeake Bay, Lawrence R. Pomeroy, Christopher F. D'Elia, and Linda C. Schaffner

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Coral-Based Climate Variability in the Western Pacific Warm Pool since 1867, Terrence M. Quinn, Frederick W. Taylor, and Thomas J. Crowley

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Global Ocean Warming and Sea Level Rise, D. Roemmich, J. Willis, J. Gilson, D. Stammer, A. Koehl, T. Yemenis, Don P. Chambers, Felix Landerer, Jochem Marotzke, Jonathan Gregory, Tatsuo Suzuki, John Church, Neil White, Catia Domingues, Anny Cazenave, and Pierre-Yves Letraon

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Feeding Ecology and Metabolism of the Antarctic Cydippid Ctenophore Callianira Antarctica, Kerri M. Scolardi, Kendra L. Daly, Evgeny A. Pakhomov, and Joseph J. Torres

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Modelling of Wind Wave‐induced Bottom Processes during the Slack Water Periods in Tampa Bay, Florida, John Z. Shi, Mark E. Luther, and Steven D. Meyers

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Reproducibility of Geochemical and Climatic Signals in the Atlantic Coral Montastraea Faveolata, Jennifer M. Smith, Terrence M. Quinn, Kevin P. Helmle, and Robert B. Halley

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The 2005 Hurricane Season: an Echo of the Past or a Harbinger of the Future?, Jyotika I. Virmani and Robert H. Weisberg

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The 2005 Hurricane Season: An Echo of the Past or a Harbinger of the Future?, Jyotika I. Virmani and Robert H. Weisberg

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Red Tides in the Gulf of Mexico: Where, When, and Why?, John J. Walsh, J. K. Jolliff, B. P. Darrow, J. M. Lenes, S. P. Milroy, A. Remsen, D. A. Dieterle, Kendall L. Carder, F. R. Chen, Gabriel A. Vargo, Robert H. Weisberg, Kent A. Fanning, Eugene Shinn, K. A. Steidinger, Cynthia A. Heil, C. R. Tomas, J. S. Prospero, T. N. Lee, G. J. Kirkpatrick, T. E. Whitledge, D. A. Stockwell, T. A. Villareal, A. E. Jochens, P. S. Bontempi, and Frank E. Muller-Karger

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A Simulation of the Hurricane Charley Storm Surge and its Breach of North Captiva Island, Robert H. Weisberg and Lianyuan Zheng

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Circulation of Tampa Bay Driven by Buoyancy, Tides, and Winds, as Simulated Using a Finite Volume Coastal Ocean Model, Robert H. Weisberg and Lianyuan Zheng

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Hurricane Storm Surge Simulations for Tampa Bay, Robert H. Weisberg and Lianyuan Zheng

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Changes in the Circulation of Tampa Bay Due to Hurricane Frances as Recorded by ADCP Measurements and Reproduced with a Numerical Ocean Model, M. Wilson, S. D. Meyers, and Mark E. Luther

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FastGroupII: A Web-based Bioinformatics Platform for Analyses of Large 16S rDNA Libraries, Yanan Yu, Mya Breitbart, Pat McNairnie, and Forest Rohwer

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RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses, Tao Zhang, Mya Breitbart, Wah Heng Lee, Jin-Quan Run, Chia Lin Wei, Shirlena Wee Ling Soh, Martin Hibberd, Edison Liu, Forest Rohwer, and Yijun Ruan

Submissions from 2005

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PHACCS, An Online Tool for Estimating the Structure and Diversity of Uncultured Viral Communities Using Metagenomic Information, Florent Angly, Beltran Rodriguez-Brito, David Bangor, Patrick McNairnie, Mya Breitbart, Peter Salamon, Ben Felts, James Nulton, Joseph Mahaffy, and Forest Rohwer

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Interannual and Decadal Variability of the Western Pacific Sea Surface Condition for the Years 1787-2000: Reconstruction Based on Stable Isotope Record from a Guam Coral, Ryuji Asami, Tsutomu Yamada, Yasufumi Iryu, Terrence M. Quinn, Christopher P. Meyer, and Gustav Paulay

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Microbial Communities Associated with Skeletal Tumors on Porites compressa, Mya Breitbart, Ranjeet Bhagooli, Sean Griffin, Ian Johnston, and Forest Rohwer

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Phage Ecology and Bacterial Pathogenesis, Mya Breitbart, F. Rohwer, and S. T. Abedon

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Here a Virus, There a Virus, Everywhere the Same Virus?, Mya Breitbart and Forest Rohwer

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Method for Discovering Novel DNA Viruses in Blood Using Viral Particle Selection and Shotgun Sequencing, Mya Breitbart and Forest Rohwer

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Copper Speciation in San Francisco Bay: A Novel Approach Using Multiple Analytical Windows, Kristen N. Buck and Kenneth W. Bruland

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COMPS, SEACOOS and Near-Shore Waves, Rick Cole, Neil Trenaman, Robert H. Weisberg, and Kevin Amundsen

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Auditory Sensitivity of Sergeant Major Damselfish Abudefduf saxatilis from Post-Settlement Juvenile to Adult, Sarah A. Egner and David A. Mann

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Interannual Temperature Variability in the Tropical Pacific and Lagrangian Heat Transport Pathways, C. L. Holland and Gary T. Mitchum

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Mississippi River Water in the Florida Straits and in the Gulf Stream Off Georgia in Summer 2004, Chuanmin Hu, James R. Nelson, Elizabeth Johns, Zhiqiang Chen, Robert H. Weisberg, and Frank E. Muller-Karger

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Reduced Horizontal Sea Surface Temperature Gradients under Conditions of Clear Skies and Weak Winds, Kristina B. Katsaros, Alexander Soloviev, Robert H. Weisberg, and Mark E. Luther

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Fe and Zn Effects on the Si Cycle and Diatom Community Structure in Two Contrasting High and Low-silicate HNLC Areas, Karine Leblanc, Clinton Hare, P. W. Boyd, Kenneth Bruland, Bettina Sohst, Stuart Pickmere, Maeve Lohan, Kristen N. Buck, Michael Ellwood, and David Hutchins

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Diffuse Attenuation Coefficient of Downwelling Irradiance: An Evaluation of Remote Sensing Methods, ZhongPing Lee, Miroslaw Darecki, Kendall L. Carder, Curtiss O. Davis, Dariusz Stramski, and W. Joseph Rhea

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Momentum Balance Diagnoses for the West Florida Shelf, Yonggang Liu and Robert H. Weisberg

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Patterns of Ocean Current Variability on the West Florida Shelf Using the Self-Organizing Map, Yonggang Liu and Robert H. Weisberg

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Below-Cloud Ammonia Scavenging in Convective Thunderstorms at a Coastal Research Site in Tampa, FL, USA, Constance A. Mizak, Scott Campbell, Mark E. Luther, Robert P. Carnahan, Robert J. Murphy, and Noreen Poor

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GGM02 - An Improved Earth Gravity Field Model from GRACE, B. D. Tapley, J. C. Ries, S. Bettadpur, Don P. Chambers, M. Cheng, F. Condi, B. Gunter, Z. Kang, P. Nagel, R. Pastor, T. Pekker, S. Poole, and F. Wang

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Relative Humidity Over the West Florida Continental Shelf, Jyotika I. Virmani and Robert H. Weisberg

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West Florida Shelf Circulation on Synoptic, Seasonal, and Interannual Time Scales, Robert H. Weisberg, Ruoying He, Yonggang Liu, and Jyotika I. Virmani

Submissions from 2004

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Use of In Situ and Airborne Reflectance for Scaling-Up Spectral Discrimination of Coral Reef Macroalgae from Species to Communities, Serge Andrefouet, Claude Payri, Eric J. Hochberg, Chuanmin Hu, Marlin J. Atkinson, and Frank E. Muller-Karger

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Diversity and Population Structure of a Near–shore Marine–sediment Viral Community, Mya Breitbart, Ben Felts, Scott Kelley, Joseph Mahaffy, James Nulton, Peter Salamon, and Forest Rohwer

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Global Distribution of Nearly Identical Phage-encoded DNA Sequences, Mya Breitbart, Jon Miyake, and Forest Rohwer

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Phage Community Dynamics in Hot Springs, Mya Breitbart, Linda Wegley, Steven Leeds, Tom Schoenfeld, and Forest Rohwer

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Widespread Association of a Rickettsiales‐like Bacterium with Reef‐building Corals, Veronica Casas, David Kline, Linda Wegley, Yanan Yu, Mya Breitbart, and Forest Rohwer

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Preliminary Observations of Global Ocean Mass Variations with GRACE, D. Chambers, J. Wahr, and R Steven Nerem

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Evidence for Dissolved Organic Nitrogen and Phosphorus Uptake During a Cyanobacterial Bloom in Florida Bay, P. M. Glibert, Cynthia A. Heil, David J. Hollander, M. Revilla, A. Hoare, J. Alexander, and S. Murasko

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Generation, Transport, and Preservation of the Alkenone-Based U37K' Sea Surface Temperature Index in the Water Column and Sediments of the Cariaco Basin (Venezuela), Miguel A. Goni, Mark P. Woodworth, Heather L. Aceves, Robert C. Thunell, Eric Tappa, David Black, Frank E. Muller-Karger, Yrene Astor, and Ramon Varela

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Coastal Ocean Wind Fields Gauged against the Performance of an Ocean Circulation Model, Ruoying He, Yonggang Liu, and Robert H. Weisberg

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Current and Thermal Variations to Westerly Wind Bursts in the Equatorial Pacific Ocean, Ying Jang Yang, Tswen Yung Tang, and Robert H. Weisberg

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El Nino Southern Oscillation-Related Salinity Variations Recorded in the Skeletal Geochemistry of a Porites Coral from Espiritu Santo, Vanuatu, K. H. Kilbourne, Terrence M. Quinn, Frederick W. Taylor, Thierry Delcroix, and Yves Gouriou

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A Fossil Coral Perspective on Western Tropical Pacific Climate Similar to 350 Ka, K. H. Kilbourne, Terrence M. Quinn, and F. W. Taylor

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Atmospheric Concentrations and Dry Deposition Rates of Polycyclic Aromatic Hydrocarbons (PAHs) for Tampa Bay, Florida, USA, Noreen Poor, Raphael Tremblay, Venkat R. Bhethanabotla, Erick Swartz, Mark E. Luther, and Scott Campbell

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Stability of North Atlantic Water Masses in Face of Pronounced Climate Variability During the Pleistocene, M. E. Raymo, D. W. Oppo, Benjamin P. Flower, D. A. Hodell, J. F. McManus, K. A. Venz, K. F. Kleiven, and K. McIntyre

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Paleoceanographic Change During the Middle Miocene Climate Revolution: An Antarctic Stable Isotope Perspective, Amelia E. Shevenell and James P. Kennett

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Middle Miocene Southern Ocean Cooling and Antarctic Cryosphere Expansion, Amelia E. Shevenell, James P. Kennett, and David W. Lea