This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2011

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Reply to 'Not Just Family Matters', LuAnne Thompson, Renellys C. Perez, and Amelia E. Shevenell

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Diversity and Distribution of Single-stranded DNA Phages in the North Atlantic Ocean, Kimberly Tucker, Rachel Parsons, Erin Symonds, and Mya Breitbart

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Imprudent Fishing Harvests and Consequent Trophic Cascades on the West Florida Shelf Over the Last Half Century: a Harbinger of Increased Human Deaths from Paralytic Shellfish Poisoning along the Southeastern United States, in Response to Oligotrophication?, John J. Walsh, C. R. Thomas, K. A. Steidinger, J. M. Lenes, F. R. Chen, Robert H. Weisberg, Lianyuan Zheng, J. H. Landsberg, Gabriel A. Vargo, and C. A. Heil

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Coastal Ocean Pollution, Water Quality, and Ecology, Robert H. Weisberg

Submissions from 2010

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Transposases Are the Most Abundant, Most Ubiquitous Genes in Nature, Ramy Aziz, Mya Breitbart, and Robert Edwards

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Iron-binding Ligand Production and Copper Speciation in an Incubation Experiment of Antarctic Peninsula Shelf Waters From the Bransfield Strait, Southern Ocean, Kristen N. Buck, Karen Selph, and Katherine Barbeau

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Partitioning of Food Resources in Bathypelagic Micronekton in the Eastern Gulf of Mexico, Scott E. Burghart, Thomas L. Hopkins, and Joseph J. Torres

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Ocean Mass from GRACE and Glacial Isostatic Adjustment, D. Chambers, John Wahr, Mark E. Tamisea, and R Steven Nerem

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A Global Evaluation of Ocean Bottom Pressure from GRACE, OMCT, and Steric-Corrected Altimetry, D. Chambers and Josh K. Willis

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Short-Term Variability of Suspended Sediment and Phytoplankton in Tampa Bay, Florida: Observations from a Coastal Oceanographic Tower and Ocean Color Satellites, Zhiqiang Chen, Chuanmin M. Hu, Frank E. Muller-Karger, and Mark E. Luther

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Nickel Utilization in Phytoplankton Assemblages From Contrasting Oceanic Regimes, Christopher Dupont, Kristen N. Buck, Brian Palenik, and Katherine Barbeau

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Ecological Impacts of the 2005 Red Tide on Artificial Reef Epibenthic Macroinvertebrate and Fish Communities in the Eastern Gulf of Mexico, Jennifer M. Dupont, Pamela Hallock-Muller, and Walter C. Jaap

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West Florida Shelf: A Natural Laboratory for the Study of Ocean Acidification, Pamela Hallock, Lisa L. Robbins, Rebekka Larson, Tanya Beck, Patrick Schwing, Michael Martínez-Colón, and Brad Gooch

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Lagrangian Particle Tracking of a Toxic Dinoflagellate Bloom within the Tampa Bay Estuary, Heather Havens, Mark E. Luther, Steven D. Meyers, and Cynthia A. Heil

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Coupling of Surge and Waves for an Ivan-like Hurricane Impacting the Tampa Bay, Florida Region, Yong Huang, Robert H. Weisberg, and Lianyuan Zheng

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Moderate Resolution Imaging Spectroradiometer (MODIS) Observations of Cyanobacteria Blooms in Taihu Lake, China, Chuanmin Hu, Zhongping Lee, Ronghua Ma, Kun Yu, Daqiu Li, and Shaoling Shang

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On the Recurrent Ulva prolifera Blooms in the Yellow Sea and East China Sea, Chuanmin Hu, Daqiu Li, Changsheng Chen, Jianzhong Ge, Frank E. Muller-Karger, Junpeng Liu, Feng Yu, and Ming-Xia He

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Hydrological and Oceanic Effects on Polar Motion from GRACE and Models, Shaunggen Jin, Don Chambers, and Byron D. Tapley

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Time Series of Bio-Optical Properties in a Subtropical Gyre: Implications for the Evaluation of Interannual Trends of Biogeochemical Properties, ZhongPing Lee, Shaoling Shang, Chuanmin Hu, Marlon Lewis, Robert Arnone, Yonghong Li, and Bertrand Lubac

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HF Radar Performance in a Low-Energy Environment: CODAR SeaSonde Experience on the West Florida Shelf, Yonggang Liu, Robert H. Weisberg, and Clifford R. Merz

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Estimating Mean Sea Level Change from the TOPEX and Jason Altimeter Missions, R. S. Nerem, Don P. Chambers, C. Choe, and Gary T. Mitchum

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Viral and Microbial Community Dynamics in Four Aquatic Environments, Beltran Rodriguez-Brito, LinLin Li, Linda Wegley, Mike Furlan, Florent Angly, Mya Breitbart, John Buchanan, Christelle Desnues, Elizabeth Dinsdale, and Robert Edwards

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A radiogeochemical, land-use archive of the Manatee River Watershed, FL, Patrick Schwing, Ashanti Johnson, and Charles W. Holmes

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Metagenomic Sequencing for Virus Identification in a Public-health Setting, Sanela Svraka, Karyna Rosario, Erwin Duizer, Harrie van der Avoort, Mya Breitbart, and Marion Koopmans

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Satellite-based Global-ocean Mass Balance Estimates of Interannual Variability and Emerging Trends in Continental Freshwater Discharge, Tajdarul H. Syed, James S. Famiglietti, Don P. Chambers, Josh K. Willis, and Kyle Hilburn

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Deglacial Abrupt Climate Change in the Atlantic Warm Pool: A Gulf of Mexico Perspective, Carlie Williams, Benjamin P. Flower, David W. Hastings, Thomas P. Guilderson, Kelly A. Quinn, and Ethan A. Goddard

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Global Sea Level Rise: Recent Progress and Challenges for the Decade to Come, Josh K. Willis, Don P. Chambers, C. K. Shum, and Chung-Yen Kuo

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Analysis of Seasonal Ocean Bottom Pressure Variability in the Gulf of Thailand from GRACE, B. Wouters and Don P. Chambers

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Rookery Bay and Naples Bay Circulation Simulations: Applications to Tides and Fresh Water Inflow Regulation, Lianyuan Zheng and Robert H. Weisberg

Submissions from 2009

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A Nested Model of the Cariaco Basin (Venezuela): Description of the Basin'S Interior Hydrography and Interactions with the Open Ocean, Aida Alvera-Azcarate, Alexander Barth, and Robert H. Weisberg

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The Surface Circulation of the Caribbean Sea and the Gulf of Mexico as Inferred from Satellite Altimetry, Aida Alvera-Azcarate, Alexander Barth, and Robert H. Weisberg

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Genomic Analysis of Multiple Roseophage SIO1 Strains, Florent Angly, Merry Youle, Bahador Nosrat, Shailaja Srinagesh, Beltran Rodriguez‐Brito, Patrick McNairnie, Gordafaried Deyanat‐Yazdi, Mya Breitbart, and Forest Rohwer

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Dynamically Constrained Ensemble Perturbations - Application to Tides on Thewest Florida Shelf, Alexander Barth, Aida Alvera-Azcarate, J. M. Beckers, Robert H. Weisberg, L. Vandenbulcke, F. Lenartz, and M. Rixen

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Dynamically Constrained Ensemble Perturbations: Application to Tides on the West Florida Shelf, Alexander Barth, Aida Alvera-Azcarate, J. M. Beckers, Robert H. Weisberg, L. Vandenbulcke, F. Lenartz, and M. Rixen

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Frequent Detection of Highly Diverse Variants of Cardiovirus, Cosavirus, Bocavirus, and Circovirus in Sewage Samples Collected in the United States, O. Blinkova, Karyna Rosario, A. Kapoor, B. Slikas, F. Bernardin, Mya Breitbart, and E. Delwart

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Comparison of Inherent Optical Properties as Surrogate for Particulate Matter Concentration in Coastal Waters, Emmanuel Boss, Lisa Taylor, Sherryl Gilbert, Kjell Gundersen, Nathan Hawley, Carol Janzen, Tom Johengen, Heidi Purcell, Charles Robertson, Daniel Schar, G. Jason Smith, and Mario Tamburri

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Metagenomic and Stable Isotopic Analyses of Modern Freshwater Microbialites in Cuatro Ciénegas, Mexico, Mya Breitbart, Ana Maria Hoare, Anthony G. Nitti, Janet Siefert, Matthew Haynes, Elizabeth Dinsdale, Robert Edwards, Valeria Souza, Forest Rohwer, and David Hollander

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Surface and Subsurface Geostrophic Current Variability in the Indian Ocean From Altimetry, Dara D. H. Cadden, Bulusu Subrahmanyam, D. Chambers, and V.S. N. Murty

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Calculating Trends from GRACE in the Presence of Large Changes in Continental Ice Storage and Ocean Mass, D. Chambers

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Measuring Mean Ocean Mass Variability with GRACE, Don P. Chambers

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Low-Frequency Exchange of Mass Between Ocean Basins, Don P. Chambers and Josh K. Willis

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US GODAE: Global Ocean Prediction with the HYbrid Coordinate Ocean Model (HYCOM), Eric P. Chassignet, Harley E. Hurlburt, E. J. Metzger, Ole-Martin Smedstad, James Cummings, George R. Halliwell Jr., Rainer Bleck, Remy Baraille, and Robert H. Weisberg

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Influence of Extreme Storm Events on West Florida Shelf CDOM Distributions, Robyn N. Conmy, Paula G. Coble, Jennifer P. Cannizzaro, and Cynthia A. Heil

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Observing the 3-Dimensional Distribution of Bio-Optical Properties of West Florida Shelf Waters using Gliders and Autonomous Platforms, David English, Chuanmin M. Hu, Chad Lembke, Robert H. Weisberg, David Edwards, Laura Lorenzoni, Gino Gonzalez, and Frank E. Muller-Karger

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Autonomous Buoy Platform for Low-Cost Visual Maritime Surveillance: Design and Initial Deployment, Sergiy Fefilatyev, Dmitry Goldgof, and Chad Lembke

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Impact of GODAE Products on Nested HYCOM Simulations of the West Florida Shelf, George R. Halliwell Jr., Alexander Barth, Robert H. Weisberg, Patrick J. Hogan, Ole-Martin Smedstad, and James Cummings

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A Coastal Prediction System as an Event Response Tool: Particle Tracking Simulation of an Anhydrous Ammonia Spill in Tampa Bay, Heather Havens, Mark E. Luther, and Steven D. Meyers

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Evaluation of Global Ocean Data Assimilation Experiment Products on South Florida Nested Simulations with the Hybrid Coordinate Ocean Model, Vassiliki H. Kourafalou, Ge Peng, HeeSook Kang, Patrick J. Hogan, Ole-Martin Smedstad, and Robert H. Weisberg

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Natural and Anthropogenic Sources of East Asian Dust, Geojun Li, Jun Chen, Junfeng Ji, Jiedong Yang, and Tim M. Conway

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Short-Term Upwelling Events Modulate Fish Sound Production at a Mid-Atlantic Ocean Observatory, David A. Mann and T. M. Grothues

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Mean Dynamic Topography of the Ocean Derived from Satellite and Drifting Buoy Data Using Three Different Techniques, Nikolai Maximenko, Peter Niiler, Marie-Helene Rio, Oleg Melnichenko, Luca Centurioni, Boris Galperin, Don. P. Chambers, and Victor Zlotnicki

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Regional Estimates of Reef Carbonate Dynamics and Productivity Using Landsat 7 ETM+, and Potential Impacts from Ocean Acidification, Christopher S. Moses, Serge Andrefouet, Christine J. Kranenburg, and Frank E. Muller-Karger

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Discovery of a Novel Single-Stranded DNA Virus from a Sea Turtle Fibropapilloma by Using Viral Metagenomics, Terry Fei Fan Ng, Charles Manire, Kelly Borrowman, Tammy Langer, Llewellyn Ehrhart, and Mya Breitbart

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Novel Anellovirus Discovered From a Mortality Event of Captive California Sea Lions, Terry Fei Fan Ng, Wm Kirk Suedmeyer, Elizabeth Wheeler, Frances Gulland, and Mya Breitbart

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Diverse Circovirus-like Genome Architectures Revealed by Environmental Metagenomics, Karyna Rosario, Siobain Duffy, and Mya Breitbart

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Metagenomic Analysis of Viruses in Reclaimed Water, Karyna Rosario, Christina Nilsson, Yan Wei Lim, Yijun Ruan, and Mya Breitbart

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Pepper Mild Mottle Virus as an Indicator of Fecal Pollution, Karyna Rosario, Erin M. Symonds, C. D. Sinigalliano, Jill Stewart, and Mya Breitbart

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Towards a Regional Coastal Ocean Observing System: an Initial Design for the Southeast Coastal Ocean Observing Regional Association, Harvey E. Seim, M. Fletcher, C. N. K. Mooers, James R. Nelson, and Robert H. Weisberg

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Evaluation of Groundwater Storage Monitoring with the GRACE Satellite: Case Study High Plains Aquifer, Central United States, Gil Strassberg, Bridget Scanlon, and D. Chambers

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GRACE-based Estimates of Terrestrial Freshwater Discharge from Basin to Continental Scales, Tajdarul H. Syed, James S. Famiglietti, and Don Chambers

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Eukaryotic Viruses in Wastewater Samples from the United States, Erin M. Symonds, Dale Griffin, and Mya Breitbart

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Laboratory Procedures to Generate Viral Metagenomes, Rebecca Thurber, Matthew Haynes, Mya Breitbart, Linda Wegley, and Forest Rohwer

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Reorganization of Pacific Deep Waters Linked to Middle Miocene Antarctic Cryosphere Expansion: A Perspective from the South China Sea, Jun Tian, Amelia E. Shevenell, Pinxian Wang, Qianyu Li, and Xinrong Cheng

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Fish Effects on Ocean Current Observations in the Cariaco Basin, Jyotika I. Virmani and Robert H. Weisberg

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Isotopic Evidence for Dead Fish Maintenance of Florida Red Tides, with Implications for Coastal Fisheries Over Both Source Regions of the West Florida Shelf and Within Downstream Waters of the South Atlantic Bight, John J. Walsh, Robert H. Weisberg, J. M. Lenes, F. R. Chen, Dwight A. Dieterle, Lianyuan Zheng, Kendall L. Carder, and Gabriel A. Vargo

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A Coordinated Coastal Ocean Observing and Modeling System for the West Florida Continental Shelf, Robert H. Weisberg, Alexander Barth, Aida Alvera-Azcarate, and Lianyuan Zheng

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West Florida Shelf Mean Circulation Observed with Long-Term Moorings, Robert H. Weisberg, Yonggang Liu, and Dennis A. Mayer

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Detecting Marine Hazardous Substances and Organisms: Sensors for Pollutants, Toxins, and Pathogens, O. Zielinski, J. A. Busch, A. D. Cembella, Kendra L. Daly, J. Engelbrektsson, A. K. Hannides, and H. Schmidt

Submissions from 2008

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Benefit of Nesting a Regional Model into a Large-Scale Ocean Model Instead of Climatology. Application to the West Florida Shelf, A. Barth, Aida Alvera-Azcarate, and Robert H. Weisberg

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A Nested Model Study of the Loop Current Generated Variability and Its Impact on the West Florida Shelf, Alexander Barth, Aida Alvera-Azcarate, and Robert H. Weisberg

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Assimilation of High-Frequency Radar Currents in a Nested Model of the West Florida Shelf, Alexander Barth, Aida Alvera-Azcarate, and Robert H. Weisberg

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Viral Diversity and Dynamics in an Infant Gut, Mya Breitbart, Matthew Haynes, Scott Kelley, Florent Angly, Robert Edwards, Ben Felts, Joseph Mahaffy, Jennifer Mueller, James Nulton, Steve Rayhawk, Beltran Rodriguez-Brito, Peter Salamon, and Forest Rohwer

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Marine Viruses: Community Dynamics, Diversity, and Impact on Microbial Processes, Mya Breitbart, Mathias Middelboe, and Forest Rohwer

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Analysis of Large-scale Ocean Bottom Pressure Variability in the North Pacific, Don P. Chambers and Josh K. Willis

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Biodiversity and Biogeography of Phages in Modern Stromatolites and Thrombolites, Christelle Desnues, Beltran Rodriguez-Brito, Steve Rayhawk, Scott Kelley, and Mya Breitbart

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Functional Metagenomic Profiling of Nine Biomes, Elizabeth Dinsdale, Robert Edwards, Dana Hall, Florent Angly, Mya Breitbart, Lauren D. McDaniel, and John Paul

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A Bacterial Metapopulation Adapts Locally to Phage Predation Despite Global Dispersal, Victor Kunin, Shaomei He, Falk Warnecke, S. Brook Peterson, Hector Garcia Martin, Matthew Haynes, Natalia Ivanova, Linda Blackall, Mya Breitbart, Forest Rohwer, Katherine McMahon, and Philip Hugenholtz

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Saharan Dust and Phosphatic Fidelity: A Three-Dimensional Biogeochemical Model of Trichodesmium as a Nutrient Source for Red Tides on the West Florida Shelf, J. M. Lenes, B. A. Darrow, John J. Walsh, J. M. Prospero, R. He, Robert H. Weisberg, Gabriel A. Vargo, and C. A. Heil

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Patterns of Upper Layer Circulation Variability in the South China Sea from Satellite Altimetry Using the Self-Organizing Map, Yonggang Liu, Robert H. Weisberg, and Yaochu Yuan

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Status of Sensors for Physical Oceanographic Measurements, Mark Luther, Sherryl Gilbert, and Tamburri Tamburri

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Metagenomic Analysis of Lysogeny in Tampa Bay: Implications for Prophage Gene Expression, Lauren D. McDaniel, Mya Breitbart, Jennifer M. Mobberley, Amy Long, Matthew Haynes, Forest Rohwer, and John Paul

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A Numerical Simulation of Residual Circulation in Tampa Bay. Part II: Lagrangian Residence Time, Steven D. Meyers and Mark E. Luther

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A Three-Dimensional Biophysical Model of Karenia Brevis Dynamics on the West Florida Shelf: a Look at Physical Transport and Potential Zooplankton Grazing Controls, Scott P. Milroy, Dwight A. Dieterle, Ruoying He, Gary J. Kirkpatrick, Kristen M. Lester, Karen A. Steidinger, Gabriel A. Vargo, John J. Walsh, and Robert H. Weisberg

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In Situ Observations and Satellite Remote Sensing in Seacoos: Program Development and Lessons Learned, James R. Nelson and Robert H. Weisberg

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Seacoos Program Management, Harvey E. Seim, James Nelson, Madilyn Fletcher, C. N. K. Mooers, Lundie Spence, Robert H. Weisberg, Francisco Werner, Sarah M. Smith, and Russ Lea

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High Frequency Radar Observing Systems in SEACOOS: 2002-2007 Lessons Learned, Lynn K. Shay, Harvey E. Seim, David Savidge, Richard Styles, and Robert H. Weisberg

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Middle Miocene Ice sheet Dynamics, Deep‐Sea Temperatures, and Carbon Cycling: A Southern Ocean Perspective, Amelia E. Shevenell, James P. Kennett, and David W. Lea

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A Comparison of Near-Surface Current Measurement Methods, Eric Siegel, Dennis A. Mayer, and Robert H. Weisberg

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Estimating Geocenter Variations from a Combination of GRACE and Ocean Model Output, Sean Swenson, D. Chambers, and John Wahr

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Si Cycle in the Cariaco Basin, Venezuela: Seasonal Variability in Silicate Availability and the Si:C:N Composition of Sinking Particles, Robert C. Thunell, Claudia Benitez-Nelson, Frank E. Muller-Karger, Laura Lorenzoni, Mary Scranton, Ramon Varela, Yrene Astor, and Kent A. Fanning

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Waves Initiative Within Seacoos, George Voulgaris, Brian K. Haus, Paul Work, Lynn K. Shay, Harvey E. Seim, Robert H. Weisberg, and James R. Nelson

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Satellite Remote Sensing of Surface Oceanic Fronts in Coastal Waters off West–Central Florida, Carrie C. Wall, Frank E. Muller-Karger, Mitchell A. Roffer, Chuanmin M. Hu, Wensheng Yao, and Mark E. Luther

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Epilogue to SEACOOS, Robert H. Weisberg

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Hurricane Storm Surge Simulations Comparing Three-Dimensional with Two-Dimensional Formulations Based on an Ivan-like Storm over the Tampa Bay, Florida Region, Robert H. Weisberg and Lianyuan Zheng

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Assessing the Globally Averaged Sea Level Budget on Seasonal to Interannual Timescales, Josh K. Willis, D. Chambers, and R Steven Nerem

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GRACE Observes Small-scale Mass Loss in Greenland, B. Wouters, D. Chambers, and E.J. O. Schrama

Submissions from 2007

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Micro- and Macronutrients in the Southeastern Bering Sea: Insight Into Iron-replete and Iron-depleted Regimes, Ana Aguilar-Islas, Matthew Hurst, Kristen N. Buck, Bettina Sohst, Geoffrey Smith, Maeve Lohan, and Kenneth Bruland

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Multivariate Reconstruction of Missing Data in Sea Surface Temperature, Chlorophyll, and Wind Satellite Fields, Aida Alvera-Azcarate, Alexander Barth, J. M. Beckers, and Robert H. Weisberg

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Filtering Inertia-Gravity Waves from the Initial Conditions of the Linear Shallow Water Equations, Alexander Barth, Jean-Marie Beckers, Aida Alvera-Azcarate, and Robert H. Weisberg

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Exploring the Vast Diversity of Marine Viruses, Mya Breitbart, Luke Thompson, Curtis Suttle, and Matthew Sullivan