This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2016

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Managing Microbial Risks from Indirect Wastewater Reuse for Irrigation in Urbanizing Watersheds, Matthew Verbyla, Erin Symonds, Ram Kafle, Maryann Cairns, Mercedes Iriarte, Alvaro Mercado Guzmán, Olver Coronado, Mya Breitbart, Carmen Ledo, and James Mihelcic

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Recent Change - North Sea, Thomas Wahl

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Climate Controls Multidecadal Variability in U. S. Extreme Sea Level Records, Thomas Wahl and Don P. Chambers

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Impacts of Combined Overfishing and Oil Spills on the Plankton Trophodynamics of the West Florida Shelf Over the Last Half Century of 1965-2011: a Two-Dimensional Simulation Analysis of Biotic State Transitions, from a Zooplankton- to a Bacterioplankton-Modulated Ecosystem, John J. Walsh, Jason M. Lenes, Brian P. Darrow, Ashley A. Parks, and Robert H. Weisberg

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Hercules 265 Rapid Response: Immediate Ecosystem Impacts of a Natural Gas Blowout Incident, Sarah C. Weber, Leigha Peterson, Jessica J. Battles, Brian J. Roberts, Richard N. Peterson, David J. Hollander, Jeffrey P. Chanton, Samantha Joye, and Joseph P. Montoya

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West Florida Shelf Upwelling: Origins and Pathways, Robert H. Weisberg, Lianyuan Zheng, and Yonggang Liu

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Karenia Brevis Blooms on the West Florida Shelf: A Comparative Study of the Robust 2012 Bloom and the Nearly Null 2013 Event, Robert H. Weisberg, Lianyuan Zheng, Yonggang Liu, Alina A. Corcoran, Chad Lembke, Chuanmin Hu, Jason M. Lenes, and John J. Walsh

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Did Deepwater Horizon Hydrocarbons Transit to the West Florida Continental Shelf?, Robert H. Weisberg, Lianyuan Zheng, Yonggang Liu, Steven Murawski, Chuamin Hu, and John Paul

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Did Deepwater Horizon Hydrocarbons Transit to the West Florida Continental Shelf?, Robert H. Weisberg, Lianyuan Zheng, Yonggang Liu, Steven Murawski, Chuanmin Hu, and John Paul

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Processes of Multibathyal Aragonite Undersaturation in the Arctic Ocean, Jonathan G. Wynn, Lisa Robbins, and L. G. Anderson

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Recent Increases in Arctic Freshwater Flux Affects Labrador Sea Convection and Atlantic Overturning Circulation, Qian Yang, Tim Dixon, Paul G. Myers, Jennifer Bonin, Don Chambers, M.R. van den Broeke, Mads H. Ribergaard, and John Mortensen

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Short-Term Changes of Remote Sensing Reflectancein a Shallow-Water Environment: Observations from Repeated Airborne Hyperspectral Measurements, Mingrui Zhang, D. English, Chuanmin Hu, P. Carlson, Frank E. Muller-Karger, G. Toro-Farmer, and S. R. Herwitz

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Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume, Brian L. Zielinski, Andrew E. Allen, Edward J. Carpenter, Victoria J. Coles, Byron C. Crump, Mary Doherty, Rachel A. Foster, Joaquim I. Goes, Helga R. Gomes, Raleigh R. Hood, John P. McCrow, Joseph P. Montoya, Ahmed Moustafa, Brandon M. Satinsky, Shalabh Sharma, Christa B. Smith, Patricia L. Yager, and John H Paul

Submissions from 2015

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Stochastic Lagrangian Trajectory Modeling of Surface Drifters Deployed during the Deepwater Horizon Oil Spill, Ana J. Abascal, Sonia Castanedo, R. Minguez, Raul Medina, Yonggang Liu, and Robert H. Weisberg

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Ratification Vote on Taxonomic Proposals to the International Committee on Taxonomy of Viruses, M. Adams, E. J. Lefkowitz, A. M. Q. King, D. H. Bamford, and Mya Breitbart

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An Atlantis Ecosystem Model for the Gulf of Mexico supporting Integrated Ecosystem Assessment, Cameron Ainsworth, Michael Schirripa, and Hem Nalini Morzaria-Luna

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Multidimensional Metrics for Estimating Phage Abundance, Distribution, Gene Density, and Sequence Coverage in Metagenomes, Ramy Aziz, Bhakti Dwivedi, Sajia Akhter, Mya Breitbart, and Robert Edwards

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Prediction of Coral Bleaching in the Florida Keys Using Remotely Sensed Data, Brian B. Barnes, P. Hallock, Chuanmin Hu, Frank E. Muller-Karger, D. Palandro, C. Walter, and R. Zepp

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Influence of Temperature on Yolk Resorption in Common Snook Centropomus Undecimalis (Bloch, 1792) Larvae, C. C. Barón-Aguilar, N. R. Rhody, N. P. Brennan, K. L. Main, E. B. Peebles, and Frank E. Muller-Karger

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Discovery, Prevalence, and Persistence of Novel Circular Single-Stranded DNA Viruses in the Ctenophores Mnemiopsis leidyi and Beroe ovata, Mya Breitbart, Bayleigh Benner, Parker Jernigan, Karyna Rosario, Laura Birsa, Rachel Harbeitner, Sidney Fulford, Carina Graham, Anna Walters, Dawn Goldsmith, Stella Berger, and Jens Nejstgaard

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Annual to Millennial Record of Sediment Delivery to US Virgin Island Coastal Environments, Gregg Brooks, Rebekka A. Larson, Barry Devine, and Patrick Schwing

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Sedimentation Pulse in the NE Gulf of Mexico following the 2010 DWH Blowout, Gregg R. Brooks, Rebekka A. Larson, Patrick Schwing, Isabel C. Romero, Christopher Moore, Gert-Jan Reichart, Tom Jilbert, Jeff P. Chanton, David W. Hastings, Will A. Overholt, Kala P. Marks, Joel E. Kostka, Charles W. Holmes, and David Hollander

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The Organic Complexation of Dissolved Iron Along the U.S. GEOTRACES (GA03) North Atlantic Section, Kristen N. Buck, Bettina Sohst, and Peter N. Sedwick

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Iron-binding Ligands and Humic Substances in the San Francisco Bay Estuary and Estuarine-influenced Shelf Regions of Coastal California, Randelle Bundy, Hussain Abdulla, Patrick Hatcher, Dondra Biller, Kristen N. Buck, and Katherine Barbeau

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Ecological Characteristics of Eucalanoid Copepods of the Eastern Tropical North Pacific Ocean: Adaptations for Life Within a Low Oxygen System, Christine J. Cass

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Temporal and Spatial Availability of Atlantic Thread Herring, Opisthonema Oglinum, in Relation to Oceanographic Drivers and Fishery Landings on the Florida Panhandle, D. Chagaris, B. Mahmoudi, Frank E. Muller-Karger, W. Cooper, and K. Fischer

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Biogeochemical Cycling of Cadmium Isotopes along a High-Resolution Section through the North Atlantic Ocean, Tim M. Conway and Seth G. John

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The Cycling of Iron, Zinc and Cadmium in the North East Pacific Ocean – Insights from Stable Isotopes, Tim M. Conway and Seth G. John

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Constraints on Soluble Aerosol Iron Flux to the Southern Ocean at the Last Glacial Maximum, Tim M. Conway, E. W. Wolff, R. Röthlisberger, R. Mulvaney, and H. E. Elderfield

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Nutrient concentrations for the northeastern Gulf of Mexico and west Florida shelf: June 2012 – August 2014, Kendra L. Daly

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Shell Dissolution in Larger Benthic Foraminifers Exposed to Ph and Temperature Extremes: Results from an in Situ Experiment, Brienne E. Engel, Pamela Hallock, Roy E. Price, and Thomas Brichler

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Discovery of a Novel Circular DNA Virus in the Forbes Sea Star, Asterias forbesi, Elizabeth Fahsbender, Ian Hewson, Karyna Rosario, Allison Tuttle, Arvind Varsani, and Mya Breitbart

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Development of a Serological Assay for the Sea Lion (Zalophus californianus) Anellovirus, ZcAV, Elizabeth Fahsbender, Karyna Rosario, John Cannon, Frances Gulland, Larry Dishaw, and Mya Breitbart

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An Ammonium Enrichment Event in the Surface Ocean: Wind Forcing and Potential Ramifications, Kent A. Fanning, Robert T. Masserini Jr., John J. Walsh, Rik Wanninkhof, K. Sullivan, Jyotika I. Virmani, and Cynthia A. Heil

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Partitioning of Dissolved Iron and Iron Isotopes into Soluble and Colloidal Phases along the GA03 GEOTRACES North Atlantic Transect, Jessica N. Fitzsimmons, Gonzalo G. Carrasco, Jingfeng Wu, Saeed Roshan, Mariko Hatta, Christopher I. Measures, Tim M. Conway, Seth G. John, and Edward A. Boyle

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Meta-omic Signatures of Microbial Metal and Nitrogen Cycling in Marine Oxygen Minimum Zones, Jennifer B. Glass, Cecilia B. Kretz, Sangita Ganesh, Piyush Ranjan, Sherry L. Seston, Kristen N. Buck, William M. Landing, Peter L. Morton, James W. Moffett, Stephen J. Giovannoni, Kevin L. Vergin, and Frank J. Stewart

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Water Column Stratification Structures Viral Community Composition in the Sargasso Sea, Dawn Goldsmith, Jennifer Brum, Max Hopkins, Craig Carlson, and Mya Breitbart

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Deep Sequencing of the Viral phoH Gene Reveals Temporal Variation, Depth-specific Composition, and Persistent Dominance of the Same Viral phoH Genes in the Sargasso Sea, Dawn Goldsmith, Rachel Parsons, Damitu Beyene, Peter Salamon, and Mya Breitbart

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Changing Influences between Life and Limestones in Earth History, Pamela Hallock

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Shelf break Exchange Events near the De Soto Canyon, Peter Hamilton, Kevin Speer, Richard Snyder, Nicolas Wienders, and Robert R. Leben

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Spectral and Spatial Requirements of Remote Measurements of Pelagic Sargassum Macroalgae, Chuamin Hu, Lian Feng, Robert F. Hardy, and Eric J. Hochberg

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Phytoplankton Adapt to Changing Ocean Environments, A. J. Irwin, Z. V. Finkel, Frank E. Muller-Karger, and L. T. Ghinaglia

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Reply to Brun Et Al.: Fingerprint of Evolution Revealed by Shifts in Realized Phytoplankton Niches in Natural Populations, Andrew J. Irwin, Zoe V. Finkel, Frank E. Muller-Karger, and Luis Troccoli Ghinaglia

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Decadal- to Centennial-Scale East Asian Summer Monsoon Variability during the Medieval Climate Anomaly Reconstructed from an Eastern Tibet Lacustrine Sequence, Hanchao Jiang, Amelia E. Shevenell, Song Yu, Hongyan Xu, and Xue Mao

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Using Dispersants after Oil Spills: Impacts on the Composition and Activity of Microbial Communities, Sara Kleindienst, John H. Paul, and Samantha B. Joye

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Response of the Miliolid Archaias angulatus to Simulated Ocean Acidification, Paul O. Knorr, Lisa L. Robbins, Peter J. Harries, Pamela Hallock, and Jonathan G. Wynn

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Coastal Ocean Forecasting: Science Foundation and User Benefits, V. H. Kourafalou, P. De Mey, J. Staneva, N. Ayoub, A. Barth, and Robert H. Weisberg

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Elemental Signature of Terrigenous Sediment Runoff as Recorded in Coastal Salt Ponds: US Virgin Islands, Rebekka Larson, Gregg Brooks, Barry Devine, Patrick Schwing, Charles W. Holmes, Tom Jilbert, and Gert-Jan Reichart

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Sabrina Coast Marine Record of Cryosphere – Ocean Dynamics, Amy Leventer, E. Domack, Sean P.S. Gulick, B. Huber, A. Orsi, and Amelia E. Shevenell

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Potential Impact of Climate Change on the Intra-Americas Sea: Part-1. a Dynamic Downscaling of the Cmip5 Model Projections, Y. Liu, S. K. Lee, D. B. Enfield, B. A. Muhling, J. T. Lamkin, Frank E. Muller-Karger, and M. A. Roffer

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Coastal Ocean Observing Systems, Yonggang Liu, Heather Kerkering, and Robert H. Weisberg

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Introduction to Coastal Ocean Observing Systems, Yonggang Liu, Heather Kerkering, and Robert H. Weisberg

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Glider Salinity Correction for Unpumped Ctd Sensors across a Sharp Thermocline, Yonggang Liu, Robert H. Weisberg, and Chad Lembke

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Organic Ligands- A Key Control on Trace Metal Biogeochemistry in the Oceans, Maeve Lohan and Kristen N. Buck

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Characterization of Phytoplankton Variability in the Cariaco Basin Using Spectral Absorption, Taxonomic and Pigment Data, Laura Lorenzoni, G. Toro-Farmer, R. Varela, L. Guzman, J. Rojas, Enrique Montes, and Frank E. Muller-Karger

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Natural and Unnatural Oil Slicks in the Gulf of Mexico, I. R. MacDonald, O. Garcia-Pineda, A. Beet, S. Daneshgar, L. Feng, G. Graettinger, D. French-Mccay, J. Holmes, Chuanmin Hu, F. Huffer, I. Leifer, Frank E. Muller-Karger, A. Solow, M. Silva, and G. Swayze

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Technology for Ocean Acidification Research: Needs and Availability, Todd R. Martz, Kendra L. Daly, Robert H. Byrne, Jonathan H. Stillman, and Daniela Turk

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Improved Coastal Wetland Mapping Using Very-High 2-Meter Spatial Resolution Imagery, M. J. McCarthy, E. J. Merton, and Frank E. Muller-Karger

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Sand Patties Provide Evidence for the Presence of Deepwater Horizon Oil on the Beaches of the West Florida Shelf, Lauren McDaniel, J Basso, Erin Pulster, and John H. Paul

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Foraminiferal Assemblage Indices: A Comparison of Sediment and Reef Rubble Samples from Conch Reef, Florida, USA, Christy McNey Stephenson, Pamela Hallock, and Francisco Kelmo

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Effect of Radio Frequency Interference (RFI) Noise Energy on WERA Performance Using the "Listen Before Talk" Adaptive Noise Procedure on the West Florida Shelf, Clifford R. Merz, Yonggang Liu, Klaus-Werner Gurgel, Leif Peterson, and Robert H. Weisberg

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Observations of Hysteresis in the Annual Exchange Circulation of a Large Microtidal Estuary, Steven D. Meyers, Monica Wilson, and Mark E. Luther

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Intercomparison of Dissolved Trace Elements at the Bermuda Atlantic Time Series Station, R. Middag, R. Séférian, Tim M. Conway, Seth G. John, K. W. Bruland, and H. J. W. de Baar

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Coral Regeneration Assay, Elizabeth F. Moses and Pamela Hallock

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Ciliated Protists from the Nepheloid Layer and Water Column of Sites Affected by the Deepwater Horizon Oil Spill in the Northeastern Gulf of Mexico, Joseph A. Moss, Chelsea McCurry, Sarah Tominack, Isabel C. Romero, David Hollander, Wade H. Jeffrey, and Richard A. Snyder

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Potential Impact of Climate Change on the Intra-Americas Sea: Part 2. Implications for Atlantic Bluefin Tuna and Skipjack Tuna Adult and Larval Habitats, B. A. Muhling, Y. Liu, S. K. Lee, J. T. Lamkin, M. A. Roffer, Frank E. Muller-Karger, and J. F. Walter

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Natural Variability of Surface Oceanographic Conditions in the Offshore Gulf of Mexico, Frank E. Muller-Karger, J. P. Smith, S. Werner, R. Chen, M. Roffer, Y. Liu, B. Muhling, D. Lindo-Atichati, J. Lamkin, S. Cerdeira-Estrada, and D. B. Enfield

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Enhancing the Ocean Observing System to Meet Restoration Challenges in the Gulf of Mexico, Steven Murawski and William T. Hogarth

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Nutrients in the Open Ocean, Claire Parker, Kristen N. Buck, and Katherine Barbeau

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Phytoplankton Community Structure and Depth Distribution Changes in the Cariaco Basin between 1996 and 2010, J. L. Pinckney, C. R. Benitez-Nelson, R. C. Thunell, Frank E. Muller-Karger, Laura Lorenzoni, L. Troccoli, and R. Varela

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Interpretation of Complexometric Titration Data: An Intercomparison of Methods for Estimating Models of Trace Metal Complexation by Natural Organic Ligands, Ivanka Pižeta, Sylvia Sander, Robert Hudson, Dario Omanović, Oliver Baars, Katherine Barbeau, Kristen N. Buck, Randelle Bundy, Gonzalo Carrasco, Peter Croot, Cédric Garnier, Louise Gerringa, Martha Gledhill, Katsumi Hirose, Yoshiko Kondo, Luis Laglera, Jochen Nuester, Micha Rijkenberg, Shigenobu Takeda, Benjamin Twining, and Mona C. Wells Mona C. Wells

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Molecular Surveillance of Plant Viruses: Identification of New and Emerging Viruses of Tomato Before They Cause Epidemics, J. Polston, Karyna Rosario, and Mya Breitbart

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δ13C and δ15N in Deep-Living Fishes and Shrimps after the Deepwater Horizon Oil Spill, Gulf of Mexico, Ester Quintana-Rizzo, Joseph J. Torres, Steve W. Ross, Isabel Romero, Kathleen Watson, Ethan Goddard, and David Hollander

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The Isotopic Signature and Distribution of Particulate Iron in the North Atlantic Ocean, Brandi N. Revels, Daniel C. Ohnemus, Phoebe J. Lam, Tim M. Conway, and Seth G. John

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Tracking the Hercules 265 Marine Gas Well Blowout in the Gulf of Mexico, Isabel C. Romero, Tamay Özgökmen, Susan Snyder, Patrick Schwing, Bryan J. O'Malley, Francisco J. Beron‐Vera, Maria J. Olascoaga, Ping Zhu, Edward Ryan, Shuyi S. Chen, Dana L. Wetzel, David Hollander, and Steven Murawski

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Hydrocarbons in Deep-Sea Sediments following the 2010 Deepwater Horizon Blowout in the Northeast Gulf of Mexico, Isabel C. Romero, Patrick Schwing, Gregg R Brooks, Rebekka A Larson, David W. Hastings, Greg Ellis, Ethan Goddard, and David Hollander

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Novel Circular Single-stranded DNA Viruses Identified in Marine Invertebrates Reveal high Sequence Diversity and Consistent Predicted Intrinsic Disorder Patterns within Putative Structural Proteins, Karyna Rosario, Ryan Schenck, Rachel Harbeitner, Stephanie Lawler, and Mya Breitbart

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Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae) Reveal Novel Begomovirus Species in the New and OldWorlds, Karyna Rosario, Yee Mey Seah, Christian Marr, Arvind Varsani, Simona Kraberger, Daisy Stainton, Enrique Moriones, Jane Polston, and Siobain Duffy

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The Effect of Natural Organic Ligands on Trace Metal Speciation in San Francisco Bay: Implications for Water Quality Criteria, Sylvia Sander, Kristen N. Buck, and Mona Wells

Phytoplankton Blooms: New Initiative Using Marine Optics as a Basis for Monitoring Programs, E. Santamaría-del-Angel, I. Soto, R. Millán-Nuñez, A. González-Silvera, J. Wolny, S. Cerdeira-Estrada, R. Cajal-Medrano, Frank E. Muller-Karger, Jennifer Cannizzaro, Y. XS Padilla-Rosas, A. Mercado-Santana, F. F. Gracia-Escobar, P. Alvarez-Torres, and M. C. Ruiz-de-la-Torre

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A Decline in Benthic Foraminifera following the Deepwater Horizon Event in the Northeastern Gulf of Mexico, Patrick Schwing, Isabel Romero, Gregg R. Brooks, David Hastings, Rebekka A. Larson, and David Hollander

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A Decline in Benthic Foraminifera following the Deepwater Horizon Event in the Northeastern Gulf of Mexico, Patrick Schwing, Isabel C. Romero, Gregg R Brooks, David W Hastings, Rebekka A Larson, and David Hollander

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Autobiographical Sketches: Women in Oceanography: 10 Years Later, Amelia E. Shevenell

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Southern Exposure: New Paleoclimate Insights From Southern Ocean and Antarctic Margin Sediments, Amelia E. Shevenell and Steven M. Bohaty

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PAH Exposure in Gulf of Mexico Demersal Fishes, Post-Deepwater Horizon, Susan M. Snyder, Erin Pulster, Dana L Wetzel, and Steven A. Murawski

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Evaluation and Optimization of Remote Sensing Techniques for Detection of Karenia Brevis Blooms on the West Florida Shelf, I. M. Soto, Jennifer Cannizzaro, Frank E. Muller-Karger, Chuanmin Hu, J. Wolny, and Dmitry Goldgof

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Surface Oil Footprint and Trajectory of the Ixtoc-I Oil Spill Determined from Landsat/MSS and CZCS Observations, Shaojie Sun, Chuanmin Hu, and John W. Tunnell

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Strategic Assessment of Fisheries Independent Monitoring Programs in the Gulf of Mexico, Paul Mark Suprenand, Michael Drexler, David L. Jones, and Cameron H. Ainsworth

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Reduction of Nutrients, Microbes, and Personal Care Products in Domestic Wastewater by a Benchtop Electrocoagulation Unit, E. Symonds, M. Cook, S. McQuaig, R. Ulrich, R. Schenck, J. Lukasik, E. Van Vleet, and Mya Breitbart

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Affordable Enteric Virus Detection Techniques Are Needed to Support Changing Paradigms in Water Quality Management, Erin M. Symonds and Mya Breitbart

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The GEOTRACES Intermediate Data Product 2014, The GEOTRACES Group and Tim M. Conway

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Whither the U.S. National Ocean Policy Implementation Plan?, H. Torres, Frank E. Muller-Karger, D. Keys, H. Thornton, Mark E. Luther, and K. Alsharif

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Community Metabolism in Shallow Coral Reef and Seagrass Ecosystems, Lower Florida Keys, D. Turk, K. K. Yates, M. Vega-Rodriguez, G. Toro-Farmer, C. L'Esperance, N. Melo, D. Ramsewak, M. Dowd, S. C. Estrada, Frank E. Muller-Karger, S. R. Herwitz, and W. R. McGillis

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Influence of Water-Temperature Variability on Stony Coral Diversity in Florida Keys Patch Reefs, M. Vega-Rodriguez, Frank E. Muller-Karger, P. Hallock, G. A. Quiles-Perez, C. M. Eakin, M. Colella, D. L. Jones, J. Li, I. Soto, L. Guild, S. Lynds, and R. Ruzicka

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Increasing risk of Compound Flooding from Storm Surge and Rainfall for Major US Cities, Thomas Wahl, Shaleen Jain, Jens Bender, Steven D. Meyers, and Mark E. Luther

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A Simulation Analysis of the Plankton Fate of the Deepwater Horizon Oil Spills, J. J. Walsh, J. M. Lenes, B. P. Darrow, A. A. Parks, Robert H. Weisberg, Lianyuan Zheng, C. Hu, B. B. Barnes, Kendra L. Daly, and S. I. Shin

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A Simulation Analysis of the Plankton Fate of the Deepwater Horizon Oil Spills, John J. Walsh, Jason M. Lenes, Brian P. Darrow, Ashley A. Parks, Robert H. Weisberg, Lianyuan Zheng, and Chuanmin Hu

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Extracting Oil Slick Features From VIIRS Nighttime Imagery Using a Gaussian Filter and Morphological Constraints, Mengqiu Wang and Chuanmin Hu

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Basic Tenets for Coastal Ocean Ecosystems Monitoring, Robert H. Weisberg, Lianyuan Zheng, and Yonggang Liu

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Potential Habitat of Acropora spp. on Reefs of Florida, Puerto Rico, and the US Virgin Islands, Katherine Wirt