This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2016

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Hydrocarbons in deep-sea sediments following the 2010 Deepwater Horizon oil spill in the Northeast Gulf of Mexico, Isabel Romero

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Begomovirus-Associated Satellite DNA Diversity Captured Through Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae), Karyna Rosario, Christian Marr, Arvind Varsani, Simona Kraberger, Daisy Stainton, Enrique Moriones, Jane E Polston, and Mya Breitbart

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Employing Extant Stable Carbon Isotope Data in Gulf of Mexico Sedimentary Organic Matter for Oil Spill Studies, Brad E. Rosenheim, Matthew A. Pendergraft, George C. Flowers, Robert Carney, José L. Sericano, Jeff Chanton, Zeynep Dincer, and Terry L. Wade

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Towards quantitative viromics for both double-stranded and single-stranded DNA viruses., Simon Roux, Natalie E Solonenko, Vinh T Dang, Bonnie T Poulos, Sarah M Schwenck, Dawn B Goldsmith, Maureen L Coleman, Mya Breitbart, and Matthew B Sullivan

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Linking Oceanographic Modeling and Benthic Mapping with Habitat Suitability Models for Pink Shrimp on the West Florida Shelf, Peter J. Rubec, Jesse Lewis, David Reed, Christi Santi, Robert H. Weisberg, Lianyuan Zheng, Chris Jenkins, Charles F. Ashbaugh, Curt Lashley, and Salvatore Versaggi

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Benthic Foraminifera Abundance, Stable Isotopes, Desoto Canyon Sediments, 2010-2012, Patrick Schwing

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Using Foraminifera to Assess Benthic Distribution, Impacts and Recovery following Sedimentary Oil Deposition Associated with the DWH and Ixtoc Events, Patrick Schwing, Michael Martinez-Colon, Maria Luisa Machain-Castillo, Isabel C. Romero, Jeff P. Chanton, Bryan J. O'Malley, Erika E Fridrik, Gregg Brooks, David Hastings, Rebekka A. Larson, and David J. Hollander

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Sediment Core Extrusion Method at Millimeter Resolution Using a Calibrated, Threaded-rod, Patrick Schwing, Isabel C. Romero, Rebekka A Larson, Bryan J. O'Malley, Erika E Fridrik, Ethan Goddard, Gregg R Brooks, David Hastings, Brad Rosenheim, David Hollander, Guy Grant, and Jim Mulhollan

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Drilling and Modeling Studies Expose Antarctica’s Miocene Secrets, Amelia E. Shevenell

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Quantification of Boat Visitation Rates at Artificial and Natural Reefs in the Eastern Gulf of Mexico Using Acoustic Recorders, Peter Simard, Kara R. Wall, David A. Mann, Carrie C. Wall, and Christopher D. Stallings

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Clumped Isotope Composition of Cold-water Corals: A Role for Vital Effects?, Peter T. Spooner, Weifo Guo, Laura F. Robinson, Nivedita Thiagarajan, Katharine R. Hendry, Brad E. Rosenheim, and Melanie J. Leng

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Temporal Variability of Diapycnal Mixing in the Northern South China Sea, Hui Sun, Qingxuan Yang, Wei Zhao, Xinfeng Liang, and Jiwei Tian

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Faecal Pollution Along the Southeastern Coast of Florida and Insight into the Use of Pepper Mild Mottle Virus as an Indicator, E. M. Symonds, C. Sinigalliano, M. Gidley, W. Ahmed, S. M. McQuaig‐Ulrich, and Mya Breitbart

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Single-stranded DNA Phages: From Early Molecular Biology Tools to Recent Revolutions in Environmental Microbiology, Anna Székely and Mya Breitbart

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Characterization of Available Light for Seagrass and Patch Reef Productivity in Sugarloaf Key, Lower Florida Keys, Gerardo Toro-Farmer, Frank E. Muller-Karger, Maria Vega-Rodriguez, Nelson Melo, Kimberly Yates, Sergio Cerdeira-Estrada, and Stanley R. Herwitz

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The Impact of a Barrier Island Loss on Extreme Events in the Tampa Bay, Marius Ulm, Arne Arns, Thomas Wahl, Steven D. Meyers, Mark E. Luther, and Jürgen Jensen

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Managing Microbial Risks from Indirect Wastewater Reuse for Irrigation in Urbanizing Watersheds, Matthew Verbyla, Erin Symonds, Ram Kafle, Maryann Cairns, Mercedes Iriarte, Alvaro Mercado Guzmán, Olver Coronado, Mya Breitbart, Carmen Ledo, and James Mihelcic

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Recent Change - North Sea, Thomas Wahl

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Climate Controls Multidecadal Variability in U. S. Extreme Sea Level Records, Thomas Wahl and Don P. Chambers

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Impacts of Combined Overfishing and Oil Spills on the Plankton Trophodynamics of the West Florida Shelf Over the Last Half Century of 1965-2011: a Two-Dimensional Simulation Analysis of Biotic State Transitions, from a Zooplankton- to a Bacterioplankton-Modulated Ecosystem, John J. Walsh, Jason M. Lenes, Brian P. Darrow, Ashley A. Parks, and Robert H. Weisberg

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West Florida Shelf Upwelling: Origins and Pathways, Robert H. Weisberg, Lianyuan Zheng, and Yonggang Liu

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Karenia Brevis Blooms on the West Florida Shelf: A Comparative Study of the Robust 2012 Bloom and the Nearly Null 2013 Event, Robert H. Weisberg, Lianyuan Zheng, Yonggang Liu, Alina A. Corcoran, Chad Lembke, Chuanmin Hu, Jason M. Lenes, and John J. Walsh

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Did Deepwater Horizon Hydrocarbons Transit to the West Florida Continental Shelf?, Robert H. Weisberg, Lianyuan Zheng, Yonggang Liu, Steven Murawski, Chuanmin Hu, and John Paul

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Processes of Multibathyal Aragonite Undersaturation in the Arctic Ocean, Jonathan G. Wynn, Lisa Robbins, and L. G. Anderson

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Recent Increases in Arctic Freshwater Flux Affects Labrador Sea Convection and Atlantic Overturning Circulation, Qian Yang, Tim Dixon, Paul G. Myers, Jennifer Bonin, Don Chambers, M.R. van den Broeke, Mads H. Ribergaard, and John Mortensen

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Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume, Brian L. Zielinski, Andrew E. Allen, Edward J. Carpenter, Victoria J. Coles, Byron C. Crump, Mary Doherty, Rachel A. Foster, Joaquim I. Goes, Helga R. Gomes, Raleigh R. Hood, John P. McCrow, Joseph P. Montoya, Ahmed Moustafa, Brandon M. Satinsky, Shalabh Sharma, Christa B. Smith, Patricia L. Yager, and John H Paul

Submissions from 2015

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Stochastic Lagrangian Trajectory Modeling of Surface Drifters Deployed during the Deepwater Horizon Oil Spill, Ana J. Abascal, Sonia Castanedo, R. Minguez, Raul Medina, Yonggang Liu, and Robert H. Weisberg

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Ratification Vote on Taxonomic Proposals to the International Committee on Taxonomy of Viruses, M. Adams, E. J. Lefkowitz, A. M. Q. King, D. H. Bamford, and Mya Breitbart

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Multidimensional Metrics for Estimating Phage Abundance, Distribution, Gene Density, and Sequence Coverage in Metagenomes, Ramy Aziz, Bhakti Dwivedi, Sajia Akhter, Mya Breitbart, and Robert Edwards

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Discovery, Prevalence, and Persistence of Novel Circular Single-Stranded DNA Viruses in the Ctenophores Mnemiopsis leidyi and Beroe ovata, Mya Breitbart, Bayleigh Benner, Parker Jernigan, Karyna Rosario, Laura Birsa, Rachel Harbeitner, Sidney Fulford, Carina Graham, Anna Walters, Dawn Goldsmith, Stella Berger, and Jens Nejstgaard

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Annual to Millennial Record of Sediment Delivery to US Virgin Island Coastal Environments, Gregg Brooks, Rebekka A. Larson, Barry Devine, and Patrick Schwing

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Sedimentation Pulse in the NE Gulf of Mexico following the 2010 DWH Blowout, Gregg R. Brooks, Rebekka A. Larson, Patrick Schwing, Isabel C. Romero, Christopher Moore, Gert-Jan Reichart, Tom Jilbert, Jeff P. Chanton, David W. Hastings, Will A. Overholt, Kala P. Marks, Joel E. Kostka, Charles W. Holmes, and David Hollander

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The Organic Complexation of Dissolved Iron Along the U.S. GEOTRACES (GA03) North Atlantic Section, Kristen N. Buck, Bettina Sohst, and Peter N. Sedwick

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Iron-binding Ligands and Humic Substances in the San Francisco Bay Estuary and Estuarine-influenced Shelf Regions of Coastal California, Randelle Bundy, Hussain Abdulla, Patrick Hatcher, Dondra Biller, Kristen N. Buck, and Katherine Barbeau

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Biogeochemical Cycling of Cadmium Isotopes along a High-Resolution Section through the North Atlantic Ocean, Tim M. Conway and Seth G. John

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The Cycling of Iron, Zinc and Cadmium in the North East Pacific Ocean – Insights from Stable Isotopes, Tim M. Conway and Seth G. John

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Constraints on Soluble Aerosol Iron Flux to the Southern Ocean at the Last Glacial Maximum, Tim M. Conway, E. W. Wolff, R. Röthlisberger, R. Mulvaney, and H. E. Elderfield

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Nutrient concentrations for the northeastern Gulf of Mexico and west Florida shelf: June 2012 – August 2014, Kendra L. Daly

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Discovery of a Novel Circular DNA Virus in the Forbes Sea Star, Asterias forbesi, Elizabeth Fahsbender, Ian Hewson, Karyna Rosario, Allison Tuttle, Arvind Varsani, and Mya Breitbart

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Development of a Serological Assay for the Sea Lion (Zalophus californianus) Anellovirus, ZcAV, Elizabeth Fahsbender, Karyna Rosario, John Cannon, Frances Gulland, Larry Dishaw, and Mya Breitbart

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Partitioning of Dissolved Iron and Iron Isotopes into Soluble and Colloidal Phases along the GA03 GEOTRACES North Atlantic Transect, Jessica N. Fitzsimmons, Gonzalo G. Carrasco, Jingfeng Wu, Saeed Roshan, Mariko Hatta, Christopher I. Measures, Tim M. Conway, Seth G. John, and Edward A. Boyle

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Meta-omic Signatures of Microbial Metal and Nitrogen Cycling in Marine Oxygen Minimum Zones, Jennifer B. Glass, Cecilia B. Kretz, Sangita Ganesh, Piyush Ranjan, Sherry L. Seston, Kristen N. Buck, William M. Landing, Peter L. Morton, James W. Moffett, Stephen J. Giovannoni, Kevin L. Vergin, and Frank J. Stewart

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Water Column Stratification Structures Viral Community Composition in the Sargasso Sea, Dawn Goldsmith, Jennifer Brum, Max Hopkins, Craig Carlson, and Mya Breitbart

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Deep Sequencing of the Viral phoH Gene Reveals Temporal Variation, Depth-specific Composition, and Persistent Dominance of the Same Viral phoH Genes in the Sargasso Sea, Dawn Goldsmith, Rachel Parsons, Damitu Beyene, Peter Salamon, and Mya Breitbart

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Decadal- to Centennial-Scale East Asian Summer Monsoon Variability during the Medieval Climate Anomaly Reconstructed from an Eastern Tibet Lacustrine Sequence, Hanchao Jiang, Amelia E. Shevenell, Song Yu, Hongyan Xu, and Xue Mao

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Coastal Ocean Forecasting: Science Foundation and User Benefits, V. H. Kourafalou, P. De Mey, J. Staneva, N. Ayoub, A. Barth, and Robert H. Weisberg

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Elemental Signature of Terrigenous Sediment Runoff as Recorded in Coastal Salt Ponds: US Virgin Islands, Rebekka Larson, Gregg Brooks, Barry Devine, Patrick Schwing, Charles W. Holmes, Tom Jilbert, and Gert-Jan Reichart

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Sabrina Coast Marine Record of Cryosphere – Ocean Dynamics, Amy Leventer, E. Domack, Sean P.S. Gulick, B. Huber, A. Orsi, and Amelia E. Shevenell

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Coastal Ocean Observing Systems, Yonggang Liu, Heather Kerkering, and Robert H. Weisberg

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Introduction to Coastal Ocean Observing Systems, Yonggang Liu, Heather Kerkering, and Robert H. Weisberg

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Glider Salinity Correction for Unpumped Ctd Sensors across a Sharp Thermocline, Yonggang Liu, Robert H. Weisberg, and Chad Lembke

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Organic Ligands- A Key Control on Trace Metal Biogeochemistry in the Oceans, Maeve Lohan and Kristen N. Buck

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Effect of Radio Frequency Interference (RFI) Noise Energy on WERA Performance Using the "Listen Before Talk" Adaptive Noise Procedure on the West Florida Shelf, Clifford R. Merz, Yonggang Liu, Klaus-Werner Gurgel, Leif Peterson, and Robert H. Weisberg

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Observations of Hysteresis in the Annual Exchange Circulation of a Large Microtidal Estuary, Steven D. Meyers, Monica Wilson, and Mark E. Luther

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Intercomparison of Dissolved Trace Elements at the Bermuda Atlantic Time Series Station, R. Middag, R. Séférian, Tim M. Conway, Seth G. John, K. W. Bruland, and H. J. W. de Baar

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Nutrients in the Open Ocean, Claire Parker, Kristen N. Buck, and Katherine Barbeau

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Interpretation of Complexometric Titration Data: An Intercomparison of Methods for Estimating Models of Trace Metal Complexation by Natural Organic Ligands, Ivanka Pižeta, Sylvia Sander, Robert Hudson, Dario Omanović, Oliver Baars, Katherine Barbeau, Kristen N. Buck, Randelle Bundy, Gonzalo Carrasco, Peter Croot, Cédric Garnier, Louise Gerringa, Martha Gledhill, Katsumi Hirose, Yoshiko Kondo, Luis Laglera, Jochen Nuester, Micha Rijkenberg, Shigenobu Takeda, Benjamin Twining, and Mona C. Wells Mona C. Wells

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Molecular Surveillance of Plant Viruses: Identification of New and Emerging Viruses of Tomato Before They Cause Epidemics, J. Polston, Karyna Rosario, and Mya Breitbart

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The Isotopic Signature and Distribution of Particulate Iron in the North Atlantic Ocean, Brandi N. Revels, Daniel C. Ohnemus, Phoebe J. Lam, Tim M. Conway, and Seth G. John

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Tracking the Hercules 265 Marine Gas Well Blowout in the Gulf of Mexico, Isabel C. Romero, Tamay Özgökmen, Susan Snyder, Patrick Schwing, Bryan J. O'Malley, Francisco J. Beron‐Vera, Maria J. Olascoaga, Ping Zhu, Edward Ryan, Shuyi S. Chen, Dana L. Wetzel, David Hollander, and Steven Murawski

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Hydrocarbons in Deep-Sea Sediments following the 2010 Deepwater Horizon Blowout in the Northeast Gulf of Mexico, Isabel C. Romero, Patrick Schwing, Gregg R Brooks, Rebekka A Larson, David W. Hastings, Greg Ellis, Ethan Goddard, and David Hollander

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Novel Circular Single-stranded DNA Viruses Identified in Marine Invertebrates Reveal high Sequence Diversity and Consistent Predicted Intrinsic Disorder Patterns within Putative Structural Proteins, Karyna Rosario, Ryan Schenck, Rachel Harbeitner, Stephanie Lawler, and Mya Breitbart

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Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae) Reveal Novel Begomovirus Species in the New and OldWorlds, Karyna Rosario, Yee Mey Seah, Christian Marr, Arvind Varsani, Simona Kraberger, Daisy Stainton, Enrique Moriones, Jane Polston, and Siobain Duffy

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The Effect of Natural Organic Ligands on Trace Metal Speciation in San Francisco Bay: Implications for Water Quality Criteria, Sylvia Sander, Kristen N. Buck, and Mona Wells

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A Decline in Benthic Foraminifera following the Deepwater Horizon Event in the Northeastern Gulf of Mexico, Patrick Schwing, Isabel C. Romero, Gregg R Brooks, David W Hastings, Rebekka A Larson, and David Hollander

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Autobiographical Sketches: Women in Oceanography: 10 Years Later, Amelia E. Shevenell

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Southern Exposure: New Paleoclimate Insights From Southern Ocean and Antarctic Margin Sediments, Amelia E. Shevenell and Steven M. Bohaty

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Strategic Assessment of Fisheries Independent Monitoring Programs in the Gulf of Mexico, Paul Mark Suprenand, Michael Drexler, David L. Jones, and Cameron H. Ainsworth

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Reduction of Nutrients, Microbes, and Personal Care Products in Domestic Wastewater by a Benchtop Electrocoagulation Unit, E. Symonds, M. Cook, S. McQuaig, R. Ulrich, R. Schenck, J. Lukasik, E. Van Vleet, and Mya Breitbart

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Affordable Enteric Virus Detection Techniques Are Needed to Support Changing Paradigms in Water Quality Management, Erin M. Symonds and Mya Breitbart

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The GEOTRACES Intermediate Data Product 2014, The GEOTRACES Group and Tim M. Conway

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Whither the U.S. National Ocean Policy Implementation Plan?, H. Torres, Frank E. Muller-Karger, D. Keys, H. Thornton, Mark E. Luther, and K. Alsharif

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Increasing risk of Compound Flooding from Storm Surge and Rainfall for Major US Cities, Thomas Wahl, Shaleen Jain, Jens Bender, Steven D. Meyers, and Mark E. Luther

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A Simulation Analysis of the Plankton Fate of the Deepwater Horizon Oil Spills, John J. Walsh, Jason M. Lenes, Brian P. Darrow, Ashley A. Parks, Robert H. Weisberg, Lianyuan Zheng, and Chuanmin Hu

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Basic Tenets for Coastal Ocean Ecosystems Monitoring, Robert H. Weisberg, Lianyuan Zheng, and Yonggang Liu

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Influences of Channel Deepening and Widening on the Tidal and Nontidal Circulations of Tampa Bay, Jun Zhu, Robert H. Weisberg, Lianyuan Zheng, and Shuzong Han

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On the Flushing of Tampa Bay, Jun Zhu, Robert H. Weisberg, Lianyuan Zheng, and Shuzong Han

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On the Salt Balance of Tampa Bay, Jun Zhu, Robert H. Weisberg, Lianyuan Zheng, and Hongshuai Qi

Submissions from 2014

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Florida Gulf Bay Scallop (Argopecten Irradians Concentricus) Population Genetic Structure: Form, Variation, and Influential Factors, Theresa M. Bert, William S. Arnold, Ami E. Wilbur, Seifu Seyoum, Anne L. McMillen-Jackson, Sarah P. Stephenson, Robert H. Weisberg, and Laura A. Yarbro

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Distinct Pools of Dissolved Iron‐binding Ligands in the Surface and Benthic Boundary Layer of the California Current, Randelle Bundy, Dondra Biller, Kristen N. Buck, Kenneth Bruland, and Katherine Barbeau

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Disparity Between Planktonic Fish Egg and Larval Communities as Indicated by DNA Barcoding, Scott Burghart, Lauren Van Woudenberg, Camille Daniels, Steven Meyers, Ernst Peebles, and Mya Breitbart

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Quantification of Dissolved Iron Sources to the North Atlantic Ocean, Tim M. Conway and Seth G. John

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The Biogeochemical Cycling of Zinc and Zinc Isotopes in the North Atlantic Ocean, Tim M. Conway and Seth G. John

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Problems Associated with a Lipofuscin Extraction Method Used to Age Blue Crabs Callinectes sapidus Cultured in Florida, USA, Claire E. Crowley, Ryan L. Gandy, Kendra L. Daly, and Edward S. Van Vleet

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The Gut of Geographically Disparate Ciona intestinalis Harbors a Core Microbiota, Larry J. Dishaw, Jaime Flores-Torres, Simon Lax, Kristina Gemayel, Brittany Leigh, Daniela Melillo, M. Gail Mueller, Lenina Natale, Ivana Zucchetti, Rosaria De Santis, Maria Rosaria Pinto, Gary W. Litman, and Jack W. Gilbert

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Initial Results of Ship Detection and Tracking Using Wera Hf Ocean Radar with Mimo Configuration, A. Dzvonkovskaya, T. Helzel, L. Peterson, Clifford R. Merz, Yonggang Liu, and Robert H. Weisberg

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Initial Surface Current Measurements on the West Florida Shelf Using Wera Hf Ocean Radar with Multiple Input Multiple Output (MIMO) Synthetic Aperture, Anna Dzvonkovskaya, Clifford R. Merz, Yonggang Liu, Robert H. Weisberg, Thomas Helzel, and Leif Peterson

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The Impact of Changing Surface Ocean Conditions on the Dissolution of Aerosol Iron, Matthew Fishwick, Peter Sedwick, Maeve Lohan, Pau Worsfold, Kristen N. Buck, Thomas Church, and Simon Ussher

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Real-Time Quality Control of Current Velocity Data on Individual Grid Cells in Wera Hf Radar, Roberto Gomez, Thomas Helzel, Leif Peterson, Matthias Kniephoff, Clifford R. Merz, Yonggang Liu, and Robert H. Weisberg

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Evaluation of Foraminiferal Trace Element Cleaning Protocols on the Mg/Ca of Marine Ostracod Genus Krithe, William Gray, Jonathan Holmes, and Amelia E. Shevenell

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The Gulf of Mexico Ecohab: Karenia Program 2006-2012, Cynthia A. Heil, Deborah A. Bronk, L. K. Dixon, Gary L. Hitchcock, Gary J. Kirkpatrick, Margaret R. Mulholland, Judith M. O'Neil, John J. Walsh, Robert H. Weisberg, and Matthew Garrett

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Blooms of Karenia Brevis (Davis) G. Hansen & Ø. Moestrup on the West Florida Shelf: Nutrient Sources and Potential Management Strategies Based on a Multi-Year Regional Study, Cynthia A. Heil, L. Kellie Dixon, Emily Hall, Matthew Garrett, Jason M. Lenes, John J. Walsh, and Robert H. Weisberg

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Densovirus Associated with Sea-star Wasting Disease and Mass Mortality, Ian Hewson, Jason Button, Brent Gudenkauf, Benjamin Miner, Alisa Newton, Mya Breitbart, Elizabeth Fahsbender, and Kevin Lafferty

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Diversity of Environmental Single-Stranded DNA Phages Revealed by PCR Amplification of the Partial Major Capsid Protein, Max S. Hopkins, Shweta Kailasan, Allison Cohen, Simon Roux, Amelia E. Shevenell, Mavis Agbandje-McKenna, and Mya Breitbart

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An Undocumented Water Column Sink for Cadmium in Open Ocean Oxygen-Deficient Zones, David J. Janssen, Tim M. Conway, Seth G. John, James R. Christian, Dennis I. Kramer, Tom F. Pederson, and Jay T. Cullen

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A Role for Scavenging in the Marine Biogeochemical Cycling of Zinc and Zinc Isotopes, Seth G. John and Tim M. Conway

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Silica Cycling in the Ultra-Oligotrophic Eastern Mediterranean Sea, M. D. Krom, N. Kress, and Kent A. Fanning Ph.D.

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Reef-Scale Thermal Stress Monitoring of Coral Ecosystems: New 5-km Global Products from NOAA Coral Reef Watch, Gang Liu, Scott F. Heron, C. Mark Eakin, Frank E. Muller-Karger, María Vega-Rodriguez, Liane S. Guild, Jacqueline L. De La Cour, Erick F. Geiger, William J. Skirving, Timothy F. R. Burgess, Alan E. Strong, Andy Harris, Eileen Maturi, Alexander Ignatov, John Sapper, Jianke Li, and Susan Lynds

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Assessment of CODAR Seasonde and WERA HF Radars in Mapping Surface Currents on the West Florida Shelf, Yonggang Liu, Robert H. Weisberg, and Clifford R. Merz

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Evaluation of Altimetry-Derived Surface Current Products Using Lagrangian Drifter Trajectories in the Eastern Gulf of Mexico, Yonggang Liu, Robert H. Weisberg, Stefano Vignudelli, and Gary T. Mitchum