This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2018

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Linking Capacity Development to GOOS Monitoring Networks to Achieve Sustained Ocean Observation, Frank E. Muller-Karger

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The Scientific Legacy of the CARIACO Ocean Time-Series Program, Frank E. Muller-Karger, Yrene M. Astor, Claudia R. Benitez-Nelson, Kristen N. Buck, Kent A. Fanning, Laura Lorenzoni, Enrique Montes, Digna T. Rueda-Roa, Mary I. Scranton, Eric Tappa, Gordon T. Taylor, Robert C. Thunell, Luis Troccoli, and Ramon Varela

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Closing the Knowledge Gap for Ultra Deep Blowouts: Foci of the C-IMAGE Research Consortium, Steven Murawski and Gilbert Gilbert

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Subtropical Hydroclimate during Termination V (∼430-422 ka): Annual Records of Extreme Precipitation, Drought, and Interannual Variability from Santa Barbara Basin, Tiffany J. Napier, Ingrid L. Hendy, Linda A. Hinnov, Erik T. Brown, and Amelia E. Shevenell

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Oceanographic and Climatic Evolution of the Southeastern Subtropical Atlantic over the last 3.5 Ma, Benjamin Petrick, Erin L. McClymont, Kate Littler, Antoni Rosell-Melé, Matthew O. Clarkson, Mark Maslin, Ursula Röhl, Amelia E. Shevenell, and Richard D. Pancost

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Near-Complete Genome Sequence of a Novel Single-Stranded RNA Virus Discovered in Indoor Air, Karyna Rosario, Noah Fierer, and Mya Breitbart

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Diversity of DNA and RNA Viruses in Indoor Air As Assessed via Metagenomic Sequencing, Karyna Rosario, Noah Fierer, Shelly Miller, Julia Luongo, and Mya Breitbart

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The GEOTRACES Intermediate Data Product 2017, Reiner Schlitzer, Robert F. Anderson, Elena Dodas, Maeve Lohan, Walter Geibert, Alessandro Tagliabue, Kristen N. Buck, Tim Conway, Stephen Galer, and Ruifang Xie

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Tracing the Incorporation of Carbon into Benthic Foraminiferal Calcite Following the Deepwater Horizon Event, Patrick Schwing, Jeffrey P. Chanton, Isabel C. Romero, David Hollander, Ethan A. Goddard, Gregg R. Brooks, and Rebekka A. Larson

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Resilience of Benthic Foraminifera in the Northern Gulf of Mexico following the Deepwater Horizon Event (2011–2015), Patrick Schwing, Bryan J. O'Malley, and David Hollander

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Gulf-wide Impacts, Recovery and Connectivity of Marine Invertebrates in the Context of Oil Spills and Environmental Variability, Patrick Schwing and Yadong Wang

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Enabling a Platform for Habitat and Marine Assessment with Real Time Monitoring and Synchronous Databasing, Alex Silverman, Chad Lembke, Steven Butcher, and Steven Murawski

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Ecosystem Model of the Entire Beaufort Sea Marine Ecosystem: A Temporal Tool for Assessing Food-Web Structure and Marine Animal Populations from 1970 to 2014, Paul M. Suprenand, Cameron H. Ainsworth, and Carie Hoover

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Ecological and Indigenous Community Impacts of Oil Spill Mortality in Alaskan Marine Ecosystems, Paul M. Suprenand, Carie Hoover, Cameron H. Ainsworth, L. Dornberger, and C. J. Johnson

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Pepper mild mottle virus: A Plant Pathogen with a Greater Purpose in (Waste)water Treatment Development and Public Health Management, E. M. Symonds, Karena Nguyen, V. J. Harwood, and Mya Breitbart

Submissions from 2017

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Ecopath with Ecosim Model of the West Florida Shelf Representing 1980 for Harmful Algal Bloom Simulations, Cameron H. Ainsworth and Alisha Gray

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Inter-Calibration of a Proposed New Primary Reference Standard AA-ETH Zn for Zinc Isotopic Analysis, Corey Archer, Morten B. Anderson, Christophe Cloquet, Tim M. Conway, Shoufei Dong, Michael Ellwood, Rebekah Moore, Joey Nelson, and Mark Rehkamper

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Applying a Coupled Biophysical Model to Predict Larval Dispersal and Source/Sink Relationships in a Depleted Metapopulation of the Eastern Oyster Crassostrea virginica, William S. Arnold, Steven D. Meyers, Stephen P. Geiger, Mark E. Luther, Diego Narváez, Marc E. Frischer, and Eileen Hofmann

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Membrane Vesicles in Sea Water: Heterogeneous DNA Content and Implications for Viral Abundance Estimates, Steven Biller, Lauren McDaniel, Mya Breitbart, Everett Rogers, John Paul, and Sallie Chisholm

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ICTV Virus Taxonomy Profile: Circoviridae, Mya Breitbart, Eric Delwart, Karyna Rosario, Joaquim Segales, and Arvind Varsani

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Revisiting the Taxonomy of the Family Circoviridae: Establishment of the Genus Cyclovirus and Removal of the Genus Gyrovirus, Mya Breitbart, Balázs Harrach, Joaquim Segalés, Eric Delwart, Philippe Biagini, and Arvind Varsani

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Organic Ligands in Trace Metal Biogeochemistry, Kristen N. Buck, Maeve C. Lohan, Sylvia G. Sander, Christel Hassler, and Ivanka Pižeta

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Editorial: Organic Ligands – A Key Control on Trace Metal Biogeochemistry in the Ocean, Kristen N. Buck, Maeve Lohan, Sylvia Sander, Christel Hassler, and Ivanka Pižeta

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Optical Backscattering Measured by Airborne Lidar and Underwater Glider, James H. Churnside, Richard D. Marchbanks, Chad Lembke, and Jordon Beckler

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Evaluation of Filtration and DNA Extraction Methods for Environmental DNA Biodiversity Assessments across Multiple Trophic Levels, Anni Djurhuus, Jesse Port, Collin Closek, Kevan Yamahara, Ofelia Romero-Maraccini, Kristine Walz, Dawn Goldsmith, Reiko Michisaki, Mya Breitbart, Alexandria Boehm, and Francisco Chavez

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Diverse and Highly Recombinant Anelloviruses Associated with Weddell Seals in Antarctica, Elizabeth Fahsbender, Jennifer M. Burns, Stacy Kim, Simona Kraberger, Greg Frankfurter, and Mya Breitbart

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Initiation and Long-Term Instability of the East Antarctic Ice Sheet, Sean P.S. Gulick, Amelia E. Shevenell, Aleksandr Montelli, Rodrigo Fernandez, Catherine Smith, Sophie Warny, Steven M. Bohaty, Charlotte Sjunneskog, Amy Leventer, Bruce Frederick, and Donald D. Blankenship

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Variability and Host Density Independence in Inductions-based Estimates of Environmental Lysogeny, Knowles Knowles, Barbara Bailey, Lance Boling, Mya Breitbart, and Ana Cobián-Güemes

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Isolation and Characterization of a Shewanella Phage–Host System from the Gut of the Tunicate, Ciona intestinalis, Brittany Leigh, Charlotte Karrer, John P. Cannon, Mya Breitbart, and Larry J. Dishaw

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The Camera-Based Assessment Survey System (C-BASS): A Towed Camera Platform for Reef Fish Abundance Surveys and Benthic Habitat Characterization in the Gulf of Mexico, Chad Lembke, Sarah Grasty, Alex Silverman, Heather Broadbent, Steven Butcher, and Steven Murawski

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Data Return Aspects of CODAR and WERA High-Frequency Radars in Mapping Currents, Yonggang Liu, Clifford R. Merz, Robert H. Weisberg, Benjamin O'Loughlin, and Vembu Subramanian

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Winds on the West Florida Shelf: Regional Comparisons between Observations and Model Estimates, Dennis A. Mayer, Robert H. Weisberg, Lianyuan Zheng, and Yonggang Liu

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Microalgae Bioproduction – Feeds, Foods, Nutraceuticals, and Polymers, Clifford R. Merz and Kevan L. Main

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Changes in Residence Time due to Large-Scale Infrastructure in a Coastal Plain Estuary, Steven D. Meyers, Amanda J. Moss, and Mark E. Luther

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Genome Sequence of Euphorbia mosaic virus from Passionfruit and Euphorbia heterophylla in Florida, J. E. Polston, M. A. Londoño, A. L. Cohen, M. Padilla-Rodriguez, K. Rosario, and Mya Breitbart

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Environmental Drivers of Benthic Communities and Habitat Heterogeneity on an East Antarctic Shelf, Alexandra L. Post, Caroline Lavoie, Eugene W. Domack, Amy Leventer, Amelia E. Shevenell, Alexander D. Fraser, and NBP 14-02 SCIENCE TEAM

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Virus Discovery in All Three Major Lineages of Terrestrial Arthropods Highlights the Diversity of Single-stranded DNA Viruses Associated with Invertebrates, Karyna Rosario, Kaitlin Mettel, Bayleigh Benner, Ryan Johnson, Catherine Scott, Sohath Yusseff-Vanegas, Christopher Baker, Deby Cassill, Caroline Storer, Arvind Varsani, and Mya Breitbart

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The Acceleration of Dissolved Cobalt's Ecological Stoichiometry due to Biological Uptake, Remineralization, and Scavenging in the Atlantic Ocean, Mak A. Saito, Abagail E. Noble, Nicholas Hawco, Benjamin S. Twining, Daniel C. Ohnemus, Seth G. John, Phoebe Lam, Tim M. Conway, Rod Johnson, Dawn Moran, and Matthew McIlvin

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Constraining the Spatial Extent of Marine Oil Snow Sedimentation and Flocculent Accumulation Following the Deepwater Horizon Event Using an Excess 210Pb Flux Approach, Patrick Schwing, Greg Brooks, Rebecca Larson, C. W. Holmes, Bryan J. O'Malley, and David Hollander

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Impacts and Recovery of Benthic Marine Environments in the Aftermath of the DWH Event, Patrick Schwing, David Hollander, Paul Montagna, and Peter Santschi

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Characterizing the Variability of Benthic Foraminifera in the Northeastern Gulf of Mexico following the Deepwater Horizon Event (2010-2012), Patrick Schwing, Bryan J. O'Malley, Isabel C. Romero, M Martínez-Colón, D. W. Hastings, M. A. Glabach, E. M. Hladky, Anthony M. Greco, and David Hollander

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Virus Taxonomy in the Age of Metagenomics, Peter Simmonds, Mike Adams, Mária Benkő, Mya Breitbart, J. Rodney Brister, and Eric Carstens

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Southward Flow on the Western Flank of the Florida Current, Alexander V. Soloviev, Amy Hirons, Christopher Maingot, Cayla W. Dean, Richard E. Dodge, Alexander E. Yankovsky, Jon Wood, Robert H. Weisberg, Mark E. Luther, and Julian P. McCreary

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Copper Toxicity Response Influences Mesotrophic Synechococcus Community Structure, Rhona K. Stuart, Randelle Bundy, Kristen N. Buck, Majid Ghassemain, Kathy Barbeau, and Brian Palenik

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Microbial Source Tracking in Shellfish Harvesting Waters in the Gulf of Nicoya, Costa Rica, Erin M. Symonds, Suzanne Young, M. E. Verbyla, S. M. McQuaig-Ulrich, E. Ross, Juan Jimenez, Valerie J. Harwood, and Mya Breitbart

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The Integral Role of Iron in Ocean Biogeochemistry, Alessandro Tagliabue, Andrew R. Bowie, Philip W. Boyd, Kristen N. Buck, Kenneth S. Johnson, and Mak A. Saito

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Echosounder for Biological Surveys Using Ocean Gliders, J. Christopher Taylor and Chad Lembke

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Mapping the Soundscape Off the SoutheasternUSA by Using Passive Acoustic Glider Technology, Carrie C. Wall, David A. Mann, Chad Lembke, Chris Taylor, Ruoying He, and Todd Kellison

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More Surprises in the Global Greenhouse: Human Health Impacts from Recent Toxic Marine Aerosol Formations, Due to Centennial Alterations of World-Wide Coastal Food Webs, John J. Walsh, Jason M. Lenes, Robert H. Weisberg, Lianyuan Zheng, Chuanmin Hu, Kent A. Fanning Ph.D., R. Snyder, and J. Smith

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Variability of Tropical Cyclone Rapid Intensification in the North Atlantic and Its Relationship with Climate Variations, Chunzai Wang, Xidong Wang, Robert H. Weisberg, and Michael L. Black

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On the Loop Current Penetration into the Gulf of Mexico, Robert H. Weisberg and Yonggang Liu

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On the Movement of Deepwater Horizon Oil to Northern Gulf Beaches, Robert H. Weisberg, Lianyuan Zheng, and Yonggang Liu

Submissions from 2016

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Temporal Variability of Reactive Iron Over the Gulf of Alaska Shelf, Ana M. Aguilar-Islas, Marie J.M. Séguret, Robert Rember, Kristen N. Buck, Peter Proctor, Calvin W. Mordy, and Nancy B. Kachel

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Predator-prey diet linkages with error range for the Gulf of Mexico fitted using maximum likelihood method, Cameron H. Ainsworth

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Island building in the South China Sea: detection of turbidity plumes and artificial islands using Landsat and MODIS data, Brian B. Barnes and Chuanmin Hu

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Toxicity and Mutagenicity of the Gulf of Mexico Waters during and after the Deepwater Horizon oil spill, July 2010 to August 2012, Jonelle Basso

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The Ferrojan Horse Hypothesis: Iron-Virus Interactions in the Ocean, Chelsea Bonnain, Mya Breitbart, and Kristen N. Buck

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Biogeochemical Cycling of Organic Iron-binding Ligands: Insights From GEOTRACES Data in the Atlantic Ocean, Kristen N. Buck, Chelsea Bonnain, and Randelle Bundy

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An Intercomparison of Dissolved Iron Speciation at the Bermuda Atlantic Time-series Study (BATS) Site: Results from GEOTRACES Crossover Station A, Kristen N. Buck, Loes J. A. Gerringa, and Micha J. A. Rijkenberg

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A Compilation of Iron Speciation Data for Open Oceanic Waters, Salvatore Caprara, Kristen N. Buck, Loes J. A. Gerringa, Micha J. A. Rijkenberg, and Damiano Monticelli

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The Growth Response of Two Diatom Species to Atmospheric Dust from the Last Glacial Maximum, Tim M. Conway, Linn J. Hoffmann, Eike Breitbarth, Robert F. Strzepek, and Eric W. Wolff

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Intercomparison of Dissolved Iron Isotope Profiles from Reoccupation of three GEOTRACES Stations in the Atlantic Ocean, Tim M. Conway, Seth G. John, and F. Lacan

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Removal of Six Estrogenic Endocrine-Disrupting Compounds (EDCs) from Municipal Wastewater Using Aluminum Electrocoagulation, Monica M. Cook, Erin M. Symonds, Bert Gerber, Armando Hoare, Edward S. Van Vleet, and Mya Breitbart

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CTD and other environmental data for the northeastern Gulf of Mexico and west Florida shelf: June 2012 – August 2014, Kendra L. Daly

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Discrete chlorophyll data for the northeastern Gulf of Mexico and west Florida shelf: June 2012 – August 2014, Kendra L. Daly

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SIPPER plankton and marine snow abundance and distribution data for the northeastern Gulf of Mexico: June 2012 – August 2014, Kendra L. Daly

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Zooplankton abundance and distribution data for the northeastern Gulf of Mexico and west Florida shelf: June 2012 – August 2014, Kendra L. Daly

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Zooplankton Biomass on the West Florida Shelf, July 2010 – August 2014, Kendra L. Daly

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Zooplankton dry weight biomass data for the northeastern Gulf of Mexico and west Florida shelf: June 2012 – August 2014, Kendra L. Daly

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Assessing the Impacts of Oil-associated Marine Snow Formation and Sedimentation during and after the Deepwater Horizon Oil Spill, Kendra L. Daly, Uta Passow, Jeffrey Chanton, and David Hollander

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Gut Immunity in a Protochordate Involves a Secreted Immunoglobulin-type Mediator Binding Host Chitin and Bacteria, Larry J. Dishaw, Brittany Leigh, John P. Cannon, Assunta Liberti, M. Gail Mueller, Diana P. Skapura, Charlotte R. Karrer, Maria R. Pinto, Rosaria De Santis, and Gary W. Litman

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Spatial distributions of fish and invertebrates in the Gulf of Mexico for 2010-01-01 estimated using a statistical model, Michael Drexler

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Evaluating Climatic Response to External Radiative Forcing during the Late Miocene to Early Pliocene: New Perspectives from Eastern Equatorial Pacific (IODP U1338) and North Atlantic (ODP 982) Locations, Anna J. Drury, Cédric M. John, and Amelia E. Shevenell

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Dissolved Iron and Iron Isotopes in the Southeastern Pacific Ocean, Jessica N. Fitzsimmons, Tim M. Conway, Jong-Mi Lee, Richard Kayser, Kristen M. Thyng, Seth G. John, and Edward A. Boyle

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Mega-Scale Glacial Lineations and Grounding-Zone Wedges in Prydz Channel, East Antarctica, Michelle E. Guitard, Amelia E. Shevenell, Caroline Lavoie, and Eugene W. Domack

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Changes in Sediment Redox Conditions Following the BP DWH Blowout Event, D. W. Hastings, Patrick Schwing, G. R. Brooks, R. A. Larson, J. L. Morford, T. Roeder, K. A. Quinn, T. Bartlett, Isabel C. Romero, and David Hollander

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Quantifying Trace Element and Isotope Fluxes at the Ocean-sediment Boundary: A Review., William B. Homoky, Thomas Weber, William M. Berelson, Tim M. Conway, Gideon M. Henderson, Marco van Hulten, Catherine Jeandel, Silke Severmann, and Alessandro Tagliabue

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Satellite, glider data, and field measurements to study harmful algae on the West Florida Shelf during 2011 and 2012, Chuanmin Hu

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Vertical Migration of Karenia brevis in the Northeastern Gulf of Mexico Observed from Glider Measurements, Chuanmin Hu, Brian B. Barnes, Lin Qi, Chad Lembke, and David English

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Developing a Smart Semantic Web with Linked Data and Models for Near-Real-Time Monitoring of Red Tides in the Eastern Gulf of Mexico, Chuanmin Hu, Brock Murch, Alina A. Corcoran, Lianyuan Zheng, Brian Burnel B., Robert H. Weisberg, Karen E. Atwood, and Jason M. Lenes

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A Practical Application of Reduced-Copper Antifouling Paint in Marine Biological Research, Andrea S Jerabek, Kara R Wall, and Christopher D Stallings

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Seascapes as a New Vernacular for Pelagic Ocean Monitoring, Management and Conservation, Maria T. Kavanaugh, Matthew J. Oliver, Francisco P. Chavez, Ricardo M. Letelier, Frank E. Muller-Karger, and Scott C. Doney

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Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species, Stephanie N. Lawler, Christina A Kellogg, Scott C. France, Rachel W. Clostio, Sandra D. Brooke, and Steve W. Ross

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Generation of Germ-Free /Ciona intestinalis for Studies of Gut-Microbe Interactions, Brittany A Leigh, Assunta Liberti, and Larry J Dishaw

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Dataset for: Simulating cell death in the termination of Karenia brevis blooms: Implications for predicting aerosol toxicity vectors to humans, Jason M. Lenes

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Offshore Forcing on the “Pressure Point” of the West Florida Shelf: Anomalous Upwelling and Its Influence on Harmful Algal Blooms, Yonggang Liu, Robert H. Weisberg, Jason M. Lenes, Lianyuan Zheng, Katherine Hubbard, and John J. Walsh

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Patterns of the Loop Current System and Regions of Sea Surface Height Variability in the Eastern Gulf of Mexico Revealed by the Self-Organizing Maps, Yonggang Liu, Robert H. Weisberg, Stefano Vignudelli, and Gary T. Mitchum

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Synchronicity between Ice Retreat and Phytoplankton Bloom in Circum‐Antarctic Polynyas, Yun Li, Rubao Ji, Meibing Jin, and Julienne Stroeve

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Sunlight Induced Chlorophyll fluorescence in the Near-Infrared Spectral Region in Natural Waters: Interpretations of the Narrow Reflectance Peak around 761nm, Yingcheng Lu, Linhai Li, Minwei Zhang, Shaojie Sun, and Chunguang Lv

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West Florida Shelf beach sediment PAH and dioctyl sodium sulfosuccinate concentrations, microtox luminescence and microscreen mutagenicity data, 2010 to 2013, Lauren D. McDaniel

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A Compilation of Global Bio-optical in Situ Data for Ocean-colour Satellite Applications, Frank Muller-Karger

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Lesion data from fish collected off Terrebonne Bay, LA to the Dry Tortugas, FL, 2011-2014, Steven Murawski

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PAH Analysis: Bile PAH metabolite concentrations in longline captured fish, Northern Gulf of Mexico, 2011, Steven Murawski

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PAH analysis: Muscle and liver PAH concentrations in longline captured fish, Northern Gulf of Mexico, 2011-2013, Steven Murawski

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PAH Analysis: Red Snapper Bile PAH Metabolite Concentrations, Northern Gulf of Mexico, 2012, Steven Murawski

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Submarine Glacial Landforms on the Cold East Antarctic Margin, P. E. O'Brien, R. Beaman, Laura De Santis, Eugene W. Domack, C. Escutia, P. T. Harris, Amy Leventer, K. McMullen, A. Post, P. G. Quilty, Amelia E. Shevenell, and C. L. Batchelor

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Golden Tilefish tissue and eye-lens stable isotopes and C:N ratios from the Gulf of Mexico, summer 2013, Jenny Fenton Ostroff

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Hearing in the Juvenile Green Sea Turtle (Chelonia mydas): A Comparison of Underwater and Aerial Hearing Using Auditory Evoked Potentials, Wendy E D Piniak, David A Mann, Craig A Harms, T Todd Jones, and Scott A Eckert

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Variability of Particle Size Distributions in the Bohai Sea and the Yellow Sea, Zhongfeng Qui, Deyong Sun, Chuanmin Hu, Sengquiang Wang, Lufei Zheng, Yu Huang, and Tian Peng

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Chemical analysis of sediment and fish species near the Hercules 265 blowout, Gulf of Mexico, 2013, Isabel Romero