This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2018

Impacts of the Deepwater Horizon Oil Spill Evaluated using an End-to-End Ecosystem Model, Cameron H. Ainsworth, Claire B. Paris, Natalie Perlin, Lindsey N. Dornberger, William F. Patterson III, Emily Chancellor, Steven Murawski, David J. Hollander, Kendra L. Daly, Isabel C. Romero, Felicia Coleman, and Holly Perryman

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Impacts of the Deepwater Horizon Oil Spill Evaluated Using an End-to-End Ecosystem Model, Cameron Ainsworth, Claire B. Paris-Limouzy, Natalie Perlin, Lindsey N. Dornberger, William F. Patterson III, Emily Chancellor, Steven Murawski, David J. Hollander, Kendra L. Daly, Isabel Romero, Felicia Coleman, and Holly Perryman

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Dynamics of Stony Coral and Octocoral Juvenile Assemblages Following Disturbance on Patch Reefs of the Florida Reef Tract, Lucy A. Bartlett, Vanessa I. P. Brinkhuis, Rob R. Ruzicka, Michael A. Colella, Kathleen S. Lunz, Erin H. Leone, and Pamela Hallock

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A Centuries-Long Delay between a Paleo-Ice-Shelf Collapse and Grounding-Line Retreat in the Whales Deep Basin, Eastern Ross Sea, Antarctica, Philip J. Bart, Matthew DeCesare, Brad E. Rosenheim, Wojceich Majewski, and Austin McGlannan

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Integrated Observations and Informatics Improve Understanding of Changing Marine Ecosystems, Abigail Benson, Cassandra M. Brooks, Gabrielle Canonico, Emmett Duffy, Frank Muller-Karger, Heidi M. Sosik, Patricia Miloslavich, and Eduardo Klein

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Do Squid Breathe through Their Skin?, Matthew A. Birk, Agnieszka K. Dymowska, and Brad A. Seibel

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Ocean Acidification does Not Limit Squid Metabolism via Blood Oxygen Supply, Matthew A. Birk, Erin L. McLean, and Brad A. Seibel

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Using Satellite Laser Ranging to Measure Ice Mass Change in Greenland and Antarctica, Jennifer A. Bonin, Don P. Chambers, and Minkang Cheng

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Temporal Evaluation of Evapotranspiration for Sugar Cane, Planted Forest and Native Forest using Landsat 8 Images and a Two-Source Energy Balance, Raoni W.D. Bosquilia, Christopher M.U. Neale, Sergio N. Duarte, Solon J. Longhi, Silvio F. de B. Ferraz, Frank E. Muller-Karger, and Matthew James Mccarthy

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Beyond Chlorophyll Fluorescence: The Time is Right to Expand Biological Measurements in Ocean Observing Programs, Emmanuel Boss, Anya Waite, Anya Waite, Frank Muller-Karger, Hidekatsu Yamazaki, Rik Wanninkhof, Julia Uitz, Sandy Thomalla, Heidi Sosik, Bernadette Sloyan, Anthony Richardson, Johannes Karstensen, Gérald Grégori, Katja Fennel, Herve Claustre, Marcela Cornejo, Ilana Berman‐Frank, Sonia Batten, and Silvia Acinas

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Phage Puppet Masters of the Marine Microbial Realm, Mya Breitbart, Chelsea Bonnain, Kema Malki, and Natalie Sawaya

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Elementary Student Outreach Activity Demonstrating the Use of Phage Therapy Heroes to Combat Bacterial Infections, Mya Breitbart, Kema Malki, Natalie Sawaya, Chelsea Bonnain, and Mark Martin

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Avoiding Timescale Bias in Assessments of Coastal Wetland Vertical Change, Joshua L. Breithaupt, Joseph M. Smoak, Robert H. Byrne, Matthew N. Waters, Ryan P. Moyer, and Christian J. Sanders

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Sediment Texture and Composition of Sediment Cores Collected During R/V Weatherbird II Cruises in the Northern Gulf of Mexico from 2010-11-18 to 2016-09-09, Gregg R. Brooks and Rebekka A. Larson

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Short-lived Radioisotope Geochronology from Sediment Cores Collected During R/V Weatherbird II Cruises in the Northern Gulf of Mexico from 2010-11-18 to 2016-09-09, Gregg R. Brooks and Rebekka A. Larson

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Organic Complexation of Iron in the Eastern Tropical South Pacific: Results From US GEOTRACES Eastern Pacific Zonal Transect (GEOTRACES Cruise GP16), Kristen N. Buck, Peter N. Sedwick, Bettina Sohst, and Craig A. Carlson

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Sharing Best Practices Among Operators and Users of Oceanographic Data: Challenge, Status, and Plans of the Ocean Best Practices Project, Mark Bushnell, Luigi Pier Buttigieg, Juliet Hermes, Emma Heslop, Johannes Karstensen, Frank Muller-Karger, Cristian M. Mas, Francoise Pearlman, Jay Pearlman, Dava L. Simpson, and Pauline Simpson

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Adapting Multi-Frequency Echo-Sounders for Operation on Autonomous Vehicles, Rene Chave, Jan Buermans, David Lemon, J. Christopher Taylor, Chad Lembke, Christopher DeCollibus, Grace K. Saba, and Christian S. Reiss

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The Tampa Bay Coastal Ocean Model Performance for Hurricane Irma, Jing Chen, Robert H. Weisberg, Yonggang Liu, and Lianyuan Zheng

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Dispersant enhances hydrocarbon degradation and alters the structure of metabolically active microbial communities in shallow seawater from the northeastern Gulf of Mexico, Lena Chu, Elisa Mercando, Roger C. Prince, Isabel C. Romero, and David Hollander

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The GEOTRACES Intermediate Data Product 2017, ConwayGEOTRACES and Tim M. Conway

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Gulf Stream Rings as a Source of Iron to the North Atlantic Subtropical Gyre, Tim M. Conway, Jaime B. Palter, and Gregory F. de Souza

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Unprecedented Diversity of ssDNA Phages from the Family Microviridae Detected within the Gut of a Protochordate Model Organism (Ciona robusta), Alexandria Creasy, Karyna Rosario, and Brittany A. Leigh

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Unprecedented Diversity of ssDNA Phages from the Family Microviridae Detected within the Gut of a Protochordate Model Organism (Ciona robusta), Alexandria Creasy, Karyna Rosario, Brittany Leigh, Larry Dishaw, and Mya Breitbart

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Assessment of Maturity in the Eastern Gulf of Mexico Florida Stone Crab Menippe mercenaria Fishery, Claire E. Crowley, Ryan L. Gandy, Kendra L. Daly, and Erin H. Leone

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Numerical Modeling of the Interactions of Oil, Marine Snow, and Riverine Sediments in the Ocean, Anusha L. Dissanayake, Adrian B. Burd, Kendra L. Daly, Simone Francis, and Uta Passow

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Evaluation of Marine Zooplankton Community Structure Through Environmental DNA Metabarcoding, Anni Djurhuus, Kathleen Pitz, Natalie Sawaya, Jaimie Rojas‐Márquez, Brianna Michaud, Enrique Montes, Frank E. Muller-Karger, and Mya Breitbart

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BioTIME: A Database of Biodiversity Time Series for the Anthropocene, Maria Dornelas, Laura H. Antão, Faye Moyes, Amanda E. Bates, Anne E. Magurran, Dušan Adam, Asem A. Akhmetzhanova, Ward Appeltans, José M. Arcos, and Christopher D. Stallings

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Deciphering the State of the Late Miocene to Early Pliocene Equatorial Pacific, A. J. Drury, G. P. Lee, W. R. Gray, M. Lyle, T. Westerhold, Amelia E. Shevenell, and C. M. John

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Water Quality Observations in the Marine Aquaculture Complex of the Deeba Triangle, Lake Manzala, Egyptian Mediterranean Coast, Mahmoud M. . El-Mezayen, Digna Rueda-Roa, Mohamed A. Essa, Frank Muller-Karger, and Ahmed E. Elghobashy

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The Application of Novel Research Technologies by the Deep Pelagic Nekton Dynamics of the Gulf of Mexico (DEEPEND) Consortium, David English, Chuanmin M. Hu, Chad Lembke, and Isabel C. Romero

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Past Ice Stream and Ice Sheet Changes on the Continental Shelf off the Sabrina Coast, East Antarctica, R. Fernandez, S. Gulick, Eugene W. Domack, A. Montelli, A. Leventer, Amelia E. Shevenell, B. Frederick, and The NBP1402 Science Party

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Impact of Surface Ocean Conditions and Aerosol Provenance on the Dissolution of Aerosol Manganese, Cobalt, Nickel and Lead in Seawater, Matthew P. Fishwick, Simon J. Ussher, Peter N. Sedwick, Maeve C. Lohan, Paul J. Worsfold, Kristen N. Buck, and Thomas M. Church

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Future-Proofing the Cenozoic Macroperforate Planktonic foraminifera Phylogeny of Aze & Others (2011), Barry G. Fordham, Tracy Aze, Christian Haller, Abdullah K. Zehady, Paul N. Pearson, James G. Ogg, and Bridget S. Wade

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Seasonal Patterns in Phytoplankton Biomass across the Northern and Deep Gulf of Mexico: A Numerical Model Study, Fabian A. Gomez, Sang-Ki Lee, Frank J. Hernandez Jr, Frank E. Muller-Karger, and John T. Lamkin

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Deglacial Upwelling, Productivity and CO2 Outgassing in the North Pacific Ocean, William R. Gray, James W.B. Rae, Robert C.J. Wills, Amelia E. Shevenell, Ben Taylor, Andrea Burke, Gavin L. Foster, and Caroline H. Lear

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A Framework for Identifying and Characterising Coral Reef “Oases” against a Backdrop of Degradation, James R. Guest, Peter J. Edmunds, Ruth D. Gates, Ilsa B. Kuffner, Andreas J. Andersson, Brian Burnel Barnes, Iliana Chollett, Travis A. Courtney, Robin Elahi, and Kevin Gross

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Benthic Foraminifera from the Carnarvon Ramp Reveal Variability in Leeuwin Current Activity (Western Australia) since the Pliocene, Christian Haller, Pamela Hallock, Albert C. Hine, and Christopher G. Smith

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Trace Metals and Minor Elements in Southern Gulf of Mexico Sediments following the Ixtoc Marine Oil Blow Out Event, 2015, David W. Hastings and Thomas Bartlett

Replacement Times of a Spectrum of Elements in the North Atlantic Based on Thorium Supply, Christopher T. Hayes, Robert F. Anderson, Hai Cheng, Tim M. Conway, R. L. Edwards, Martin Q. Fleisher, Peng Ho, Kuo-Fang Huang, Seth G. John, and William M. Landing

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Cross-Shelf Exchange Associated With the Gulf Stream in the South Atlantic Bight: Direct Observations Using an Autonomous Underwater Glider, Ruoying He, Austin C. Todd, Chad Lembke, Todd Kellison, Chris Taylor, and David A. Mann

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Pervasive Iron Limitation at Subsurface Chlorophyll Maxima of the California Current, Shane L. Hogle, Christopher L. Dupont, Brian M. Hopkinson, Andrew L. King, Kristen N. Buck, Kelly L. Roe, Rhona K. Stuart, Andrew E. Allen, Elizabeth L. Mann, Zackary I. Johnson, and Katherine A. Barbeau

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Accuracy and Precision of Tidal Wetland Soil Carbon Mapping in the Conterminous United States, James R. Holmquist, Lisamarie Windham-Myers, Norman Bliss, Stephen Crooks, James T. Morris, J. P. Megonigal, Tiffany Troxler, Donald Weller, John Callaway, Joshua L. Breithaupt, and Joseph M. Smoak

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Remote Sensing Estimation of Surface Oil Volume during the 2010 Deepwater Horizon oil Blowout in the Gulf of Mexico: Scaling up AVIRIS Observations with MODIS Measurements, Chuanmin Hu, Lian Feng, Jamie Holmes, Gregg A. Swayze, Ira Leifer, Christopher Melton, Oscar Garcia, Ian MacDonald, Mark Hess, Frank E. Muller-Karger, George Graettinger, and Rebecca Green

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Coastal Ocean and Continental Shelves, Chuanmin Hu, Frank Muller-Karger, and Lisa Robbins

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Mangrove Sediment Carbon Stocks along an Elevation Gradient: Influence of the Late Holocene Marine Regression (New Caledonia), Adrien Jacotot, Cyril Marchand, Brad E. Rosenheim, Eugene W. Domack, and Michel Allenbach

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Discovery of Four Novel Circular Single-Stranded DNA Viruses in Fungus-Farming Termites, Mason Kerr, Karyna Rosario, Christopher C. M. Baker, and Mya Breitbart

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Fluctuating Fishing Intensities and Climate Dynamics Reorganize the Gulf of Mexico's Fisheries Resources, Joshua P. Kilborn, Michael Drexler, and David L. Jones

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Local Climatology of Fast Ice in McMurdo Sound, Antarctica, Stacy Kim, Ben Saenz, Jeff Scanniello, Kendra L. Daly, and David Ainley

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Characterizing Residence Patterns of North Atlantic Right Whales in the Southeastern USA with a Multistate Open Robust Design Model, A. M. Krzystan, T. A. Gowan, W. L. Kendall, J. Martin, J. G. Ortega-Ortiz, K. Jackson, A. R. Knowlton, P. Naessig, M. Zani, D. W. Schulte, and C. R. Taylor

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Zoonotic Infection With Pigeon Paramyxovirus Type 1 Linked to Fatal Pneumonia, Thijs Kuiken, Mya Breitbart, Martin Beer, Christian Grund, Dirk Höper, Bernadette van den Hoogen, Jean-Louis Kerkhoffs, and Karyna Rosario

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Core Extrusion Bulk Density/Pore Water, Northern Gulf of Mexico, November 2010 to September 2016, Rebekka A. Larson and Gregg R. Brooks

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High-Resolution Investigation of Event Driven Sedimentation: Northeastern Gulf of Mexico, Rebekka A. Larson, Gregg Brooks, Patrick Schwing, Charles W. Holmes, Savannah R. Carter, and David Hollander

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Genome Sequence of PM2-Like Phage Cr39582, Induced from a Pseudoalteromonas sp. Isolated from the Gut of Ciona robusta, Brittany Leigh, Mya Breitbart, Hanna Oksanen, Dennis Bamford, and Larry Dishaw

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The Gut Virome of the Protochordate Model Organism, Ciona intestinalis Subtype A, Brittany Leigh, Anni Djurhuus, Mya Breitbart, and Larry Dishaw

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Using Three Acoustic Technologies on Underwater Gliders to Survey Fish, Chad Lembke, Susan Lowerre-Barbieri, David Mann, and Christopher J. Taylor

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Utilizing Gliders and Acoustics to Identify Fish Habitat Hotspots, Chad Lembke, David Mann, Chris Taylor, Alex Silverman, and Edmund Hughes

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Evaluation of Satellite-Derived SST Products in Identifying the Rapid Temperature Drop on the West Florida Shelf Associated with Hurricane Irma, Yonggang Liu, Robert H. Weisberg, Jason Law, and Boyin Huang

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Real Time Observations of Oceanographic and Meteorological Parameters for Maritime Transportation: Origins and Novel Applications, Mark E. Luther, Steven D. Meyers, and Jeffrey Scudder

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A Conceptual View on Inertial Internal Waves in Relation to the Subinertial Flow on the Central West Florida Shelf, Ekatrina V. Maksimova

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The METROPOLE Project – An Integrated Framework to Analyse Local Decision Making and Adaptive Capacity to Large-Scale Environmental Change: Decision Making and Adaptation to Sea Level Rise in Santos, Brazil, José A. Marengo, Frank E. Muller-Karger, Mark Pelling, and Catherine J. Reynolds

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Benthic Foraminifera as Bioindicators of Potentially Toxic Element (Pte) Pollution: Torrecillas Lagoon (San Juan Bay Estuary), Puerto Rico, Michael Martínez-Colón, Pamela Hallock, Carlos R. Green-Ruíz, and Joseph M. Smoak

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Interspecific Interactions May Influence Reef Fish Management Strategies in the Gulf of Mexico, Michelle D. Masi, Cameron H. Ainsworth, I. C. Kaplan, and M. J. Schirripa

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Rapid Coastal Forest Decline in Florida's Big Bend, Matthew J. McCarthy, Benjamin Dimmitt, and Frank E. Muller-Karger

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Impacts of 40 Years of Land Cover Change on Water Quality in Tampa Bay, Florida, Matthew J. McCarthy, Frank E. Muller-Karger, Daniel Otis, and Pablo Méndez-Lázaro

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Water Quality Drivers in 11 Gulf of Mexico Estuaries, Matthew J. McCarthy, Daniel Otis, Pablo Méndez-Lázaro, and Frank Muller-Karger

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Enabling Efficient, Large-Scale High-Spatial Resolution Wetland Mapping using Satellites, Matthew J. McCarthy, Kara R. Radabaugh, Ryan P. Moyer, and Frank Muller-Karger

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Developing Community-Based Scientific Priorities and New Drilling Proposals in the Southern Indian and Southwestern Pacific Oceans, Robert McKay, Neville Exon, Dietmar Müller, Karsten Gohl, Michael Gurnis, Amelia E. Shevenell, Stuart Henrys, Fumio Inagaki, Dhananjai Pandey, and Jessica Whiteside

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The Biogeochemical Cycling of Iron, Copper, Nickel, Cadmium, Manganese, Cobalt, Lead, and Scandium in a California Current Experimental Study, Travis Mellett, Matthew T. Brown, P. Dreux Chappell, Carolyn Duckham Carolyn Duckham, Jessica N. Fitzsimmons, Claire P. Till, Robert M. Sherrell, Maria T. Maldonado, and Kristen N. Buck

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Photochemical Efficiencies of Diatom Symbionts in Hospite in Amphistegina Gibbosa (foraminifera) Across Seasons in the Florida Keys, Usa, Natasha Mendez-Ferrer, Pamela Hallock, and David L. Jones

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A Heat Vulnerability Index to Improve Urban Public Health Management in San Juan, Puerto Rico, P. Méndez-Lázaro, Frank E. Muller-Karger, Daniel B. Otis, M. J. McCarthy, and E. Rodríguez

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Who Should Pay for Climate Adaptation? Public Attitudes and the Financing of Flood Protection in Florida, Samuel Merrill, Jack Kartez, Karen Langbehn, Frank E. Muller-Karger, and Catherine J. Reynolds

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Wakes from Large Vessels and the Risk to the Shoreline Environment in Tampa Bay, Steven D. Meyers, Mark E. Luther, Gary Raulerson, Ed Sherwood, Stephanie Ringuet, Katie Conrad, and Gian Basili

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Salinity Induction of Recycling Crassulacean Acid Metabolism and Salt Tolerance in Plants of Talinum triangulare, Estefanía Montero, Ana Marta Francisco, Enrique Montes, and Ana Herrera

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Genomic Evolution, Recombination, and Inter-strain Diversity of Chelonid Alphaherpesvirus 5 From Florida and Hawaii Green Sea Turtles with Fibropapillomatosis, Cheryl Morrison, Luke Iwanowicz, Thierry Work, Elizabeth Fahsbender, Mya Breitbart, Cynthia Adams, Deb Iwanowicz, Lakyn Sanders, Mathias Ackermann, and Robert Cornman

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Essential Ocean Variables for Global Sustained Observations of Biodiversity and Ecosystem Changes, Frank E. Muller-Karger

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Satellite Sensor Requirements for Monitoring Essential Biodiversity Variables of Coastal Ecosystems, Frank E. Muller-Karger

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Linking Capacity Development to GOOS Monitoring Networks to Achieve Sustained Ocean Observation, Frank E. Muller-Karger

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The Scientific Legacy of the CARIACO Ocean Time-Series Program, Frank E. Muller-Karger, Yrene M. Astor, Claudia R. Benitez-Nelson, Kristen N. Buck, Kent A. Fanning, Laura Lorenzoni, Enrique Montes, Digna T. Rueda-Roa, Mary I. Scranton, Eric Tappa, Gordon T. Taylor, Robert C. Thunell, Luis Troccoli, and Ramon Varela

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Advancing Marine Biological Observations and Data Requirements of the Complementary Essential Ocean Variables (Eovs) and Essential Biodiversity Variables (Ebvs) Frameworks, Frank E. Muller-Karger and Enrique Montes

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Catch Data from Fish Collected throughout the Gulf of Mexico from 2011 until 2017, Steven A. Murawski

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Comparative Abundance, Species Composition, and Demographics of Continental Shelf Fish Assemblages throughout the Gulf of Mexico, Steven A. Murawski, Ernst B. Peebles, Adolfo Gracia, and John W. Tunnell Jr.

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Closing the Knowledge Gap for Ultra Deep Blowouts: Foci of the C-IMAGE Research Consortium, Steven Murawski and Gilbert Gilbert

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Mapping of Benthic Habitats in Komave, Coral Coast Using Worldview-2 Satellite Imagery, R. Naidu, Frank E. Muller-Karger, and M. McCarthy

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Subtropical Hydroclimate during Termination V (∼430-422 ka): Annual Records of Extreme Precipitation, Drought, and Interannual Variability from Santa Barbara Basin, Tiffany J. Napier, Ingrid L. Hendy, Linda A. Hinnov, Erik T. Brown, and Amelia E. Shevenell

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Climate-Change–driven Accelerated Sea-level Rise Detected in the Altimeter Era, R. S. Nerem, B. D. Beckley, J. T. Fasullo, B. D. Hamlinigton, D. Masters, and Gary T. Mitchum

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Oceanographic and Climatic Evolution of the Southeastern Subtropical Atlantic over the last 3.5 Ma, Benjamin Petrick, Erin L. McClymont, Kate Littler, Antoni Rosell-Melé, Matthew O. Clarkson, Mark Maslin, Ursula Röhl, Amelia E. Shevenell, and Richard D. Pancost

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Simulating Transport Pathways of Pelagic Sargassum from the Equatorial Atlantic into the Caribbean Sea, Nathan F. Putman, Gustavo J. Goni, Lewis J. Gramer, Chuanmin Hu, Elizabeth M. Johns, Joaquin Trinanes, and Mengqiu Wang

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Diurnal Changes of cyanobacteria Blooms in Taihu Lake as derived from GOCI Observations, Lin Qi, Chuanmin Hu, Petra M. Visser, and Ronghua Ma

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Spatial and Temporal Variability of pCO2, Carbon Fluxes, and Saturation State on the West Florida Shelf, Lisa L. Robbins, Kendra L. Daly, L. Barbero, R. Wanninkhof, R. He, H. Zong, J. T. Lisle, W. J. Cai, and C. G. Smith

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Regional Acidification Trends in Florida Shellfish Estuaries: a 20+ Year Look at pH, Oxygen, Temperature, and Salinity, Lisa L. Robbins and John T. Lisle

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Spatial and Temporal Variability of pCO2, Carbon Fluxes, and Saturation State on the West Florida Shelf, L. L. Robbins, Kendra L. Daly, L. Barbero, R. Wanninkhof, R. He, H. Zong, J. T. Lisle, W. J. Cai, and C. G. Smith

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Near-Complete Genome Sequence of a Novel Single-Stranded RNA Virus Discovered in Indoor Air, Karyna Rosario, Noah Fierer, and Mya Breitbart

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Diversity of DNA and RNA Viruses in Indoor Air As Assessed via Metagenomic Sequencing, Karyna Rosario, Noah Fierer, Shelly Miller, Julia Luongo, and Mya Breitbart

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Challenges in Using Celltracker Green on Foraminifers that Host Algal Endosymbionts, Benjamin J. Ross and Pamela Hallock

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Description and Mechanisms of the Mid-Year Upwelling in the Southern Caribbean Sea from Remote Sensing and Local Data, Digna T. Rueda-Roa, Tal Ezer, and Frank E. Muller-Karger

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Description and Mechanisms of the Mid-Year Upwelling in the Southern Caribbean Sea from Remote Sensing and Local Data, Digna T. Rueda-Roa, Tal Ezer, and Frank E. Muller-Karger

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The GEOTRACES Intermediate Data Product 2017, Reiner Schlitzer, Robert F. Anderson, Elena Dodas, Maeve Lohan, Walter Geibert, Alessandro Tagliabue, Kristen N. Buck, Tim Conway, Stephen Galer, and Ruifang Xie

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Sedimentary age models, benthic foraminifera, mass accumulation rates, and volcanic grain data from R/V Justo Sierra cruise in the Southern Gulf and Ixtoc I from 2015-08-03 to 2015-08-06, Patrick Schwing

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Tracing the Incorporation of Carbon into Benthic Foraminiferal Calcite Following the Deepwater Horizon Event, Patrick Schwing, Jeffrey P. Chanton, Isabel C. Romero, David Hollander, Ethan A. Goddard, Gregg R. Brooks, and Rebekka A. Larson