Marine Science Faculty Publications

 
This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2012

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Temperature Compensation of Aerobic Capacity and Performance in the Antarctic Pteropod, Clione antarctica , Compared with its Northern Congener, C. limacina , Agnieszka K. Dymowska, Thomas Manfredi, Joshua J. C. Rosenthal, and Brad A. Seibel

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Spectrophotometric Calibration of pH Electrodes in Seawater Using Purified m-Cresol Purple, Regina A. Easley and Robert H. Byrne

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Decadal Changes in the Aragonite and Calcite Saturation State of the Pacific Ocean, Richard A. Feely, Christopher L. Sabine, Robert H. Byrne, Frank J. Millero, Andrew G. Dickson, Rik Wanninkhof, Akihiko Murata, Lisa A. Miller, and Dana Greeley

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Detection and Tracking of Ships in Open Sea with Rapidly Moving Buoy-Mounted Camera System, Sergiy Fefilatyev, Dmitry Goldgof, Matthew Shreve, and Chad Lembke

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Label-Noise Reduction with Support Vector Machines, Sergiy Fefilatyev, Matthew Adam Shreve, Kurt Kramer, Lawrence Hall, Dmitry Goldgof, Rangachar Katsuri, Kendra L. Daly, Andrew Walker Remsen, and Horst Bunke

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Satellites Capture the Drought Severity Around China's Largest Freshwater Lake, Lian Feng, Chuanmin Hu, and Xiaoling Chen

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Assessment of Inundation Changes of Poyang Lake Using MODIS Observations Between 2000 and 2010, Lian Feng, Chuanmin Hu, Xiaoling Chen, Xiaobin Cai, Liqiao Tian, and Wenxia Gan

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Human Induced Turbidity Changes in Poyang Lake Between 2000 and 2010: Observations from MODIS, Lian Feng, Chuanmin Hu, Xiaoling Chen, Liqiao Tian, and Liqiong Chen

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The United States' Next Generation of Atmospheric Composition and Coastal Ecosystem Measurements: NASA's Geostationary Coastal and Air Pollution Events (GEO-CAPE) Mission, J. Fishman, L. T. Iraci, J. Al-Saadi, K. Chance, F. Chavez, M. Chin, P. Coble, C. Davis, P. M. DiGiacomo, D. Edwards, A. Eldering, J. Goes, J. Herman, C. Hu, D. J. Jacob, C. Jordan, S. R. Kawa, R. Key, X. Liu, S. Lohrenz, A. Mannino, V. Natraj, D. Neil, J. Neu, M. Newchurch, K. Pickering, J. Salisbury, H. Sosik, A. Subramaniam, M. Tzortziou, J. Wang, and M. Wang

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The Organic Complexation of Iron in the Marine Environment: A Review, Martha Gledhill and Kristen N. Buck

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Palaeoglaciology of the Alexander Island Ice Cap, Western Antarctic Peninsula, Reconstructed from Marine Geophysical and Core Data, Alastair G. C. Graham and James A. Smith

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The FoRAM Index Revisited: Uses, Challenges, and Limitations, Pamela Hallock

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An Index to Assess the Health and Benefits of the Global Ocean, Benjamin S. Halpern, Catherine Longo, Darren Hardy, Karen L. McLeon, Jameal F. Samhouri, Steven K. Katona, Kristen Kleisner, Sarah E. Lester, Jennifer O'Leary, Marla Ranelletti, and Kendra L. Daly

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Regional Beach/Cliff System Dynamics along the California Coast, Cheryl J. Hapke and Dave Reid

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Benjamin P. Flower (1962–2012), David W. Hastings, Amelia E. Shevenell, and James P. Kennett

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Density Dependence and Population Regulation in Marine Fish: a Large-scale, Long-term Field Manipulation, Mark A. Hixon, Todd W. Anderson, Kevin L. Buch, Darren W. Johnson, J. Brock McLeod, and Christopher D. Stallings

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South Florida Marine Environments Can be Assessed with Satellite Remote Sensing, Chuanmin Hu

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Evaluation of GOCI Sensitivity for At-Sensor Radiance and GDPS-Retrieved Chlorophyll-a Products, Chuanmin Hu, Lian Feng, and ZhongPing Lee

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Dynamic Range and Sensitivity Requirements of Satellite Ocean Color Sensors: Learning from the Past, Chuanmin Hu, Lian Feng, Zhongping Lee, Curtiss O. Davis, Antonio Mannino, Charles R. McClain, and Bryan A. Franz

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Chlorophyll Aalgorithms for Oligotrophic Oceans: A Novel Approach Based on Three-band Reflectance Difference, Chuanmin Hu, Zhongping Lee, and Bryan Franz

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Integrating Observing Systems to Benefit Stakeholders: A Case Study in the Gulf of Mexico, Ann E. Jochens, Matthew K. Howard, Lisa Campbell, Ruth Mullins-Perry, Gary Kirkpatrick, Barbara Kirkpatrick, Chris Simoniello, Chuanmin Hu, Robert H. Weisburg, Chad Lembke, Alina Corcoran, Jim Ivey, and Steven H. Wolfe

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Quasi-Lagrangian Drifter Studies of Iron Speciation and Cycling Off Point Conception, California, Andrew King, Kristen N. Buck, and Katherine Barbeau

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Quantifying Anthropogenically Driven Morphologic Changes on a Barrier Island: Fire Island National Seashore, New York, Meredith G. Kratzmann and Cheryl J. Hapke

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Late Quaternary Grounded Ice Extent in the Filchner Trough, Weddell Sea, Antarctica: New Marine Geophysical Evidence, Robert D. Larter, Alastair G. C. Graham, Claus-Dieter Hillenbrand, James A. Smith, and Jennifer A. Gales

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Impact of Sub-pixel Variations on Ocean Color Remote Sensing Products, Zhongping Lee, Chuanmin Hu, Robert Arnone, and Zhen Liu

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A 1-D Simulation Analysis of the Development and Maintenance of the 2001 Red Tide of the Ichthyotoxic Dinoflagellate Karenia Brevis on the West Florida Shelf, Jason M. Lenes, Brian P. Darrow, John J. Walsh, J. K. Jolliff, F. R. Chen, Robert H. Weisberg, and Lianyuan Zheng

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Varying Mesoscale Structures Influence Larval Fish Distribution in the Northern Gulf of Mexico, D. Lindo-Atichati, F. Bringas, G. Goni, B. Muhling, Frank E. Muller-Karger, and S. Habtes

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Seasonal Variability on the West Florida Shelf, Yonggang Liu and Robert H. Weisberg

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Comparison of the X-Track Altimetry Estimated Currents with Moored Adcp and Hf Radar Observations on the West Florida Shelf, Yonggang Liu, Robert H. Weisberg, Stefano Vignudelli, Laurent Roblou, and Clifford R. Merz

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Assessing Atmospheric Response to Surface Forcing in the Observations. Part II: Cross Validation of Seasonal Response Using GEFA and LIM, Zhengyu Liu, Lei Fan, Sang-Ik Shin, and Qinyu Liu

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Potential Role of Event-Driven Sediment Transport on Sediment Accumulation in the Cariaco Basin, Venezuela, Laura Lorenzoni, C. R. Benitez-Nelson, R. C. Thunell, D. Hollander, R. Varela, Y. Astor, F. A. Audemard, and Frank E. Muller-Karger

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Science in Support of the Deepwater Horizon Response, Jane Lubchenco, Marcia K. McNutt, Gabrielle Dreyfus, Steven A. Murawski, David M. Kennedy, Paul T. Anastas, Steven Chu, and Tom Hunter

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The Metabolic Response of Pteropods to Acidification Reflects Natural CO2-exposure in Oxygen Minimum Zones, A. E. Maas, K. F. Wishner, and B. A. Seibel

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Metabolic Suppression in Thecosomatous Pteropods as an Effect of Low Temperature and Hypoxia in the Eastern Tropical North Pacific, Amy E. Maas, Karen F. Wishner, and Brad A. Seibel

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Effects of Elevated Ammonia Concentrations on Survival, Metabolic Rates, and Glutamine Synthetase Activity in the Antarctic Pteropod Mollusk Clione limacina Antarctica, Amy Maas, Brad A. Seibel, and Patrick J. Walsh

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Phytoplankton Responses to Atmospheric Metal Deposition in the Coastal and Open-ocean Sargasso Sea, Katherine Mackey, Kristen N. Buck, John Casey, Abigail Cid, Michael Lomas, Yoshiki Sohrin, and Adina Paytan

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Flow Injection Analysis of Nanomolar Silicate Using Long Pathlength Absorbance Spectroscopy, Jian Ma and Robert H. Byrne

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Determination of Nanomolar Chromate in Drinking Water with Solid Phase Extraction and a Portable Spectrophotometer, Jian Ma, Bo Yang, and Robert H. Byrne

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Storm-induced Upwelling of High pCO2 Waters Onto the Continental Shelf of the Western Arctic Ocean and Implications for Carbonate Mineral Saturation States, Jeremy T. Mathis, Robert S. Pickart, Robert H. Byrne, Craig L. McNeil, G. W. Moore, Laurie W. Juranek, Xuewu Liu, Jian Ma, Regina A. Easley, Matthew M. Elliot, Jessica N. Cross, Stacey C. Reisdorph, Frank Bahr, Jamie Morison, Trina Lichendorf, and Richard A. Feely

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Applications of Science and Engineering to Quantify and Control the Deepwater Horizon Oil Spill, Marcia K. McNutt, Steven Chu, Jane Lubchenco, Tom Hunter, Gabrielle Dreyfus, Steven A. Murawski, and David M. Kennedy

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Sea Level Variability and Change, M. A. Merrifield, P. Thompson, D. P. Chambers, G. T. Mitchum, M. Menéndez, R. S. Nerem, E. Leuliette, L. Miller, S. Holgate, J. J. Marra, and W. Sweet

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Salinity Gradient Power (SGP): A Developmental Roadmap Covering Existing Generation Technologies and Recent Investigative Results into the Feasibility of Bipolar Membrane-Based Salinity Gradient Power Generation, Clifford R. Merz, Wilfrido A. Moreno, Marilyn Barger, and Stephen M. Lipka

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Evolution of the USF/CMS Codar and WERA HF Radar Network, Clifford R. Merz, Robert H. Weisberg, and Yonggang Liu

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Vertical Fluxes of Particulate Biogenic Material through the Euphotic and Twilight Zones in the Cariaco Basin, Venezuela, Enrique Montes, Frank E. Muller-Karger, R. Thunell, D. Hollander, Y. Astor, R. Varela, I. Soto, and Laura Lorenzoni

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Mesophotic Coral Buildups in a Prodelta Setting (Late Eocene, Southern Pyrenees, Spain): a Mixed Carbonate-Siliciclastic System, Michele Morsilli, Francesca R. Bosellini, Luis Pomar, Pamela Hallock, Marc Aurell, and Cesare A. Papazzoni

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Exploring Trade-Offs Between Fisheries and Conservation of the Vaquita Porpoise (Phocoena sinus) Using an Atlantis Ecosystem Model, Hem Nalini Morzaria-Luna, Cameron H. Ainsworth, Isaac C. Kaplan, Phillip S. Levin, and Elizabeth A. Fulton

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Overlap between Atlantic Bluefin Tuna Spawning Grounds and Observed Deepwater Horizon Surface Oil in the Northern Gulf of Mexico, B. A. Muhling, M. A. Roffer, J. T. Lamkin, G. W. Ingram, M. Upton, G. Gawlikowski, Frank E. Muller-Karger, S. Habtes, and W. J. Richards

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Developing Integrated Models of Southern Ocean Food Webs: Including Ecological Complexity, Accounting for Uncertainty and the Importance of Scale, E. J. Murphy, R. D. Cavanaugh, E. E. Hofmann, S. L. Hill, A. J. Constable, D. P. Costa, M. H. Pinkerton, N. M. Johnston, P. N. Trathan, J. M. Klinck, D. A. Wolf-Gladrow, Kendra L. Daly, O. Maury, and S. C. Donney

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Spatially Resolved Genomic, Stable Isotopic, and Lipid Analyses of a Modern Freshwater Microbialite from Cuatro Ciénegas, Mexico, Nitti Nitti, Camille Daniels, Janet Siefert, Valeria Souza, David Hollander, and Mya Breitbart

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Ocean Time-series Reveals Recurring Seasonal Patterns of Virioplankton Dynamics in the Northwestern Sargasso Sea, Rachel Parsons, Mya Breitbart, Michael Lomas, and Craig Carlson

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Internal Waves, an Under-Explored Source of Turbulence Events in the Sedimentary Record, L. Pomar, M. Morsili, Pamela Hallock, and B. Bádenas

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Detection and Classification of Phytoplankton Deposits Along an Estuarine Gradient, Kara R. Radabaugh and Ernst B. Peebles

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Chronology and Geochemistry of Lavas from the Nazca Ridge and Easter Seamount Chain: an ∼30 Myr Hotspot Record, Jyotiranjan S. Ray, John J. Mahoney, Robert A. Duncan, Jyotisankar Ray, Paul Wessel, and David F. Naar

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Diverse Circular ssDNA Viruses Discovered in Dragonflies (Odonata: Epiprocta), Karyna Rosario, Anisha Dayaram, Milen Marinov, Jessica Ware, Simona Kraberger, Daisy Stainton, Mya Breitbart, and Arvind Varsani

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A Field Guide to Eukaryotic Circular Single-stranded DNA Viruses: Insights Gained from Metagenomics, Karyna Rosario, Siobain Duffy, and Mya Breitbart

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Environmental Determinants of Latitudinal Size-trends in Cephalopods, Rui Rosa, Liliana Gonzalez, Heidi M. Dierssen, and Brad A. Seibel

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Direct Measurement of Riverine Particulate Organic Carbon Age Structure, Brad E. Rosenheim and Valier Galy

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A National Glider Network for Sustained Observation of the Coastal Ocean, Daniel L. Rudnick, Rebecca Baltes, Michael Crowley, Oscar Schofield, Craig M. Lee, and Chad Lembke

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Improving Understanding of Organic Metal‐binding Ligands in the Ocean, Sylvia Sander, Kristen N. Buck, and Maeve Lohan

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Energetic Plasticity Underlies a Variable Response to Ocean Acidification in the Pteropod, Limacina Helicina Antarctica, Brad A. Seibel, Amy E. Maas, and Heidi M. Dierssen

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Binational Collaboration to Study Gulf of Mexico'S Harmful Algae, I. Soto, Chuamin Hu, K. Steidinger, Frank E. Muller-Karger, Jennifer Cannizzaro, J. Wolny, S. Cerdeira-Estrada, E. Santamaria-Del-Angel, F. Tafoya-Del-Angel, P. Alvarez-Torres, J. Herrera Silveira, and J. Allen

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IntraspecIfIc CooperatIon FacIlItates SynergIstIc PredatIon, Christopher D. Stallings and Andrea L. Dingeldein

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Rossby Waves and Zonons in Zonostrophic Turbulence, Semion Sukoriansky, Nadejda Dikovskaya, Roger Grimshaw, and Boris Galperin

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Ecosystem Responses in the Southern Caribbean Sea to Global Climate Change, G. T. Taylor, Frank E. Muller-Karger, R. C. Thunell, M. I. Scranton, Y. Astor, R. Varela, L. T. Ghinaglia, Laura Lorenzoni, Kent A. Fanning, S. Hameed, and O. Doherty

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Freshwater Inflow Effects on Larval Fish and Crab Settlement Onto Oyster Reefs, S. Gregory Tolley, Bethany M. Brosious, James T. Evans, Jennifer L. Nelson, Lesli H. Haynes, Lacey K. Smith, Scott E. Burghart, and Ernst B. Peebles

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Observations on the Life Cycle of the Symbiont-Bearing Foraminifer Amphistegina Lobifera Larsen, an Invasive Species in Coastal Ecosystems of the Aegean Sea (Greece, E. Mediterranean), Maria V. Triantaphyllou, Margarita D. Dimiza, Olga Koukousioura, and Pamela Hallock

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Modelling Reef Fish Population Responses to Fisheries Restrictionsin Marine Protected Areas in the Coral Triangle, Divya Varkey, Cameron H. Ainsworth, and Tony J. Pitcher

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Shelf-Scale Mapping of Sound Production by Fishes in the Eastern Gulf of Mexico, using Autonomous Glider Technology, Carrie C. Wall, Chad Lembke, and David A. Mann

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A Critique of Alternative Power Generation for Florida by Mechanical and Solar Means, Robert H. Weisberg, Yonggang Liu, Clifford R. Merz, Jyotika I. Virmani, and Lianyuan Zheng

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SolEx: A Model for Mixed COHSCl-volatile Solubilities and Exsolved Gas Compositions in Basalt, Fred Witham, Jonathan Blundy, Simon C. Kohn, Priscille Lesne, Jacqueline Dixon, Sergey V. Churakov, and Roman Botcharnikov

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Seamounts, Ridges, and Reef Habitats of American Samoa, Dawn J. Wright, Jed T. Roberts, Douglas Fenner, John R. Smith, Anthony A.P. Koppers, David F. Naar, Emily R. Hirsch, Leslie Whaylen Clift, and Kyle R. Hogrefe

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Modeling the West Florida Coastal Ocean by Downscaling from the Deep Ocean, across the Continental Shelf and into the Estuaries, Lianyuan Zheng and Robert H. Weisberg

Submissions from 2011

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Quantifying Species Abundance Trends in the Northern Gulf of California Using Local Ecological Knowledge, C. H. Ainsworth

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Potential Impacts of Climate Change on Northeast Pacific Marine Foodwebs and Fisheries, C. H. Ainsworth, J. F. Samhouri, D. S. Busch, W. W. Cheung, J. Dunne, and T. A. Okey

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Two Shelf-Edge Marine Protected Areas in the Eastern Gulf of Mexico, Rebecca J. Allee, Andrew W. David, and David F. Naar

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Thermocline Characterisation in the Cariaco Basin: a Modelling Study of the Thermocline Annual Variation and Its Relation with Winds and Chlorophyll-A Concentration, Aida Alvera-Azcarate, Alexander Barth, Robert H. Weisberg, J. J. Castañeda, L. Vandenbulcke, and J. M. Beckers

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Running Head: Foram Assemblages from Three Substrata Comparison of Foraminiferal Assemblages from Three Kinds of Substrata, Durney Key, West-CentralFlorida, USA, K. Anderson and Pamela Hallock

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An Improved High-Resolution Sst Climatology to Assess Cold Water Events Off Florida, Brian B. Barnes, C. Hu, and Frank E. Muller-Karger

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In Situ Determination of Total Dissolved Inorganic Carbon by Underwater Membrane Introduction Mass Spectrometry, Ryan J. Bell, R. Timothy Short, and Robert H. Byrne

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Evaluation of High-frequency Oceanographic Signal in GRACE Data: Implications for De-aliasing, Jennifer A. Bonin and D. P. Chambers

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Lipid Composition of Tropical and Subtropical Copepod Species of the Genus Rhincalanus (Copepoda: Eucalanidae): A Novel Fatty Acid and Alcohol Signature, Christine J. Cass, Stuart Wakeham, and Kendra L. Daly

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ENSO-correlated Fluctuations in Ocean Bottom Pressure and Wind-stress Curl in the North Pacific, D. P. Chambers

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Measuring Ocean Mass Variability from Satellite Gravimetry, D. P. Chambers and Jens Schröter

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Directions in Biology for Ocean Observing, Kendra L. Daly

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Spatial Heterogeneity of Bacterial Communities in the Mucus of Montastraea annularis, Camille Daniels, Amy Zeifman, Kathy Heym, Kim Ritchie, Craig Watson, Ilze Berzins, and Mya Breitbart

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Estimation of Cyanobacterial Pigments in a Freshwater Lake using OCM Satellite Data, Padmanava Dash, Nan D. Walker, Deepak R. Mishra, Chuanmin Hu, James L. Pinckney, and Eurico J. D’Sa

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Perennial Ponds are Not an Important Source of Water or Dissolved Organic Matter to Groundwaters with High Arsenic Concentrations in West Bengal, India, Saugata Datta, Andrew W. Neal, T. Jade Mohajerin, Troy Ocheltree, Brad E. Rosenheim, Christopher D. White, and Karen H. Johannesson

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The Ionic Strength Dependence of Lead (II) Carbonate Complexation in Perchlorate Media, Regina A. Easley and Robert H. Byrne

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Provenance Changes Between Recent and Glacial-time Sediments in the Amundsen Sea Embayment, West Antarctica: Clay Mineral Assemblage Evidence, Werner Ehrmann, Claus-Dieter Hillenbrand, James A. Smith, Alastair G. C. Graham, Gerhard Kuhn, and Robert D. Larter

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Detection of Anomalous Particles from the Deepwater Horizon Oil Spill Using the SIPPER3 Underwater Imaging Platform, Sergiy Fefilatyev, Kurt A. Kramer, Lawrence Hall, Dmitry Goldgof, Rangachar Katsuri, Andrew Walker Remsen, and Kendra L. Daly

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Satellite Observations Make it Possible to Estimate Poyang Lake's Water Budget, Lian Feng, Chuanmin Hu, Xiaoling Chen, and Rongfang Li

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MODIS Observations of the Bottom Topography and Its Inter-annual Variability of Poyang Lake, Lian Feng, Chuanmin Hu, Xiaoling Chen, Rongfang Li, Liqiao Tian, and Brock Murch

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Lessons in Modelling and Management of Marine Ecosystems: the Atlantis Experience, Elizabeth A. Fulton, Jason S. Link, Isaac C. Kaplan, Marie Savina-Rolland, Penelope Johnson, Cameron Ainsworth, Peter Horne, Rebecca Gorton, Robert J. Gamble, Anthony D. Smith, and David C. Smith

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Development of phoH as a Novel Signature Gene for Assessing Marine Phage Diversity, Dawn Goldsmith, Giuseppe Crosti, Bhakti Dwivedi, Lauren McDaniel, Arvind Varsani, Curtis Suttle, Markus Weinbauer, Ruth-Anne Sandaa, and Mya Breitbart

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An Improved Bathymetry Compilation for the Bellingshausen Sea, Antarctica, to Inform Ice-sheet and Ocean Models, A. G. C. Graham, F. O. Nitsche, and R. D. Larter

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Ice Sheet, Alastair G. C. Graham

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The Pleistocene Glaciations of the North Sea Basin, Alastair G. C. Graham, Martyn S. Stoker, Lidia Lonergan, Tom Bradwell, and Margaret A. Stewart

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Foram Index, Pamela Hallock

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Foraminifera, Pamela Hallock

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Foraminifera are Useful Indicators of Environmental Conditions of Coral Reefs, Pamela Hallock