This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2005

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Auditory Sensitivity of Sergeant Major Damselfish Abudefduf saxatilis from Post-Settlement Juvenile to Adult, Sarah A. Egner and David A. Mann

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Global Change and Modern Coral Reefs: New Opportunities to Understand Shallow-Water Carbonate Depositional Processes, Pamela Hallock

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Interannual Temperature Variability in the Tropical Pacific and Lagrangian Heat Transport Pathways, C. L. Holland and Gary T. Mitchum

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Erratum to "Assessment of Estuarine Water-Quality Indicators Using Modis Medium-Resolution Bands: Initial Results from Tampa Bay, Fl [Remote Sensing of Environment 93(2004) 423-441], Chuanmin Hu, Zhiqiang Chen, Tonya D. Clayton, Peter Swarzenski, John C. Brock, and Frank E. Muller-Karger

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Mississippi River Water in the Florida Straits and in the Gulf Stream Off Georgia in Summer 2004, Chuanmin Hu, James R. Nelson, Elizabeth Johns, Zhiqiang Chen, Robert H. Weisberg, and Frank E. Muller-Karger

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Red Tide Detection and Tracing Using Modis Fluorescence Data: a Regional Example in Sw Florida Coastal Waters, C. Hu, Frank E. Muller-Karger, C. Taylor, Kendall L. Carder, C. Kelble, E. Johns, and C. A. Heil

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Reduced Horizontal Sea Surface Temperature Gradients under Conditions of Clear Skies and Weak Winds, Kristina B. Katsaros, Alexander Soloviev, Robert H. Weisberg, and Mark E. Luther

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Fe and Zn Effects on the Si Cycle and Diatom Community Structure in Two Contrasting High and Low-silicate HNLC Areas, Karine Leblanc, Clinton Hare, P. W. Boyd, Kenneth Bruland, Bettina Sohst, Stuart Pickmere, Maeve Lohan, Kristen N. Buck, Michael Ellwood, and David Hutchins

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Diffuse Attenuation Coefficient of Downwelling Irradiance: An Evaluation of Remote Sensing Methods, ZhongPing Lee, Miroslaw Darecki, Kendall L. Carder, Curtiss O. Davis, Dariusz Stramski, and W. Joseph Rhea

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Momentum Balance Diagnoses for the West Florida Shelf, Yonggang Liu and Robert H. Weisberg

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Patterns of Ocean Current Variability on the West Florida Shelf Using the Self-Organizing Map, Yonggang Liu and Robert H. Weisberg

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Below-Cloud Ammonia Scavenging in Convective Thunderstorms at a Coastal Research Site in Tampa, FL, USA, Constance A. Mizak, Scott Campbell, Mark E. Luther, Robert P. Carnahan, Robert J. Murphy, and Noreen Poor

The Color of the Coastal Ocean and Applications in the Solution of Research and Management Problems, Frank E. Muller-Karger, C. Hu, S. Andréfouët, R. Varela, and R. Thunell

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The Antares Observation Network, Frank E. Muller-Karger, Chuamin Hu, Brock Murch, and Charles Taylor

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The Importance of Continental Margins in the Global Carbon Cycle, Frank E. Muller-Karger, R. Varela, R. Thunell, R. Luerssen, C. Hu, and John Walsh

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Ocean Observatories Initiative Science Plan: Revealing the Secrets of Our Ocean Planet, ORION Executive Steering Committee and Kendra L. Daly

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GGM02 - An Improved Earth Gravity Field Model from GRACE, B. D. Tapley, J. C. Ries, S. Bettadpur, Don P. Chambers, M. Cheng, F. Condi, B. Gunter, Z. Kang, P. Nagel, R. Pastor, T. Pekker, S. Poole, and F. Wang

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Relative Humidity Over the West Florida Continental Shelf, Jyotika I. Virmani and Robert H. Weisberg

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West Florida Shelf Circulation on Synoptic, Seasonal, and Interannual Time Scales, Robert H. Weisberg, Ruoying He, Yonggang Liu, and Jyotika I. Virmani

Submissions from 2004

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Use of In Situ and Airborne Reflectance for Scaling-Up Spectral Discrimination of Coral Reef Macroalgae from Species to Communities, Serge Andrefouet, Claude Payri, Eric J. Hochberg, Chuanmin Hu, Marlin J. Atkinson, and Frank E. Muller-Karger

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Diversity and Population Structure of a Near–shore Marine–sediment Viral Community, Mya Breitbart, Ben Felts, Scott Kelley, Joseph Mahaffy, James Nulton, Peter Salamon, and Forest Rohwer

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Global Distribution of Nearly Identical Phage-encoded DNA Sequences, Mya Breitbart, Jon Miyake, and Forest Rohwer

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Phage Community Dynamics in Hot Springs, Mya Breitbart, Linda Wegley, Steven Leeds, Tom Schoenfeld, and Forest Rohwer

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Widespread Association of a Rickettsiales‐like Bacterium with Reef‐building Corals, Veronica Casas, David Kline, Linda Wegley, Yanan Yu, Mya Breitbart, and Forest Rohwer

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Preliminary Observations of Global Ocean Mass Variations with GRACE, D. Chambers, J. Wahr, and R Steven Nerem

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Overwintering Growth and Development of Larval Euphausia superba: An Interannual Comparison under Varying Environmental Conditions West of the Antarctic Peninsula, Kendra L. Daly

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Chemical and Biological Sensors for Time-Series Research: Current Status and New Directions, Kendra L. Daly, Robert H. Byrne, Andrew G. Dickson, Scott M. Gallager, Mary J. Perry, and Margaret K. Tivey

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Comparisons of Morphology and Neritic Distributions of Euphausia Crystallorophias and Euphausia Superba Furcilia during Autumn and Winter West of the Antarctic Peninsula, Kendra L. Daly and Jason J. Zimmerman

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Annual Cycles of Gonadal Development of Six Common Gorgonians from Biscayne National Park, Florida, Usa, K. Fitzsimmons-Sosa, Pamela Hallock, J. Wheaton, K. E. Hackett, and Michael K. Callahan

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Evidence for Dissolved Organic Nitrogen and Phosphorus Uptake During a Cyanobacterial Bloom in Florida Bay, P. M. Glibert, Cynthia A. Heil, David J. Hollander, M. Revilla, A. Hoare, J. Alexander, and S. Murasko

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Generation, Transport, and Preservation of the Alkenone-Based U37K' Sea Surface Temperature Index in the Water Column and Sediments of the Cariaco Basin (Venezuela), Miguel A. Goni, Mark P. Woodworth, Heather L. Aceves, Robert C. Thunell, Eric Tappa, David Black, Frank E. Muller-Karger, Yrene Astor, and Ramon Varela

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Biogeographical Regions of the Tropical and Subtropical Atlantic Ocean Off South America: Classification Based on Pigment (Czcs) and Chlorophyll-A (Seawifs) Variability, A. Gonzalez-Silvera, E. Santamaria-Del-Angel, V. M. Garcia, C. A. Garcia, R. Millán-Nuñez, and Frank E. Muller-Karger

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Evolution and Function of Coral Reef Ecosystems, Pamela Hallock

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Coral-Reef Risk Assessment from Satellites to Molecules: A Multi-Scale Approach to Environmental Monitoring and Risk Assessment of Coral Reefs, Pamela Hallock, Kwasi H. Barnes, and Elizabeth M. Fisher

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Coastal Ocean Wind Fields Gauged against the Performance of an Ocean Circulation Model, Ruoying He, Yonggang Liu, and Robert H. Weisberg

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Vertical and Temporal Variability of Redox Zonation in the Water Column of the Cariaco Basin: Implications for Organic Carbon Oxidation Pathways, T. Y. Ho, G. T. Taylor, Y. Astor, R. Varela, Frank E. Muller-Karger, and M. Scranton

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Assessment of Estuarine Water-Quality Indicators Using Modis Medium-Resolution Bands: Initial Results from Tampa Bay, Fl, C. Hu, Z. Chen, T. D. Clayton, P. Swarzenski, J. C. Brock, and Frank E. Muller-Karger

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The Dispersal of the Amazon and Orinoco River Water in the Tropical Atlantic and Caribbean Sea: Observation from Space and S-Palace Floats, C. Hu, E. T. Montgomery, R. W. Schmitt, and Frank E. Muller-Karger

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Linkages between Coastal Runoff and the Florida Keys Ecosystem: a Study of a Dark Plume Event, C. Hu, Frank E. Muller-Karger, G. A. Vargo, M. B. Neely, and E. Johns

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Variability of Bio-Optical Properties at Sampling Stations and Implications for Remote Sensing: a Case Study in the North-East Gulf of Mexico, C. Hu, B. Nababan, D. C. Biggs, and Frank E. Muller-Karger

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Current and Thermal Variations to Westerly Wind Bursts in the Equatorial Pacific Ocean, Ying Jang Yang, Tswen Yung Tang, and Robert H. Weisberg

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Understanding the Trophic Role of the Antarctic Ctenophore, Callianira antarctica, using Lipid Biomarkers, Se-Jong Ju, Kerri M. Scolardi, Kendra L. Daly, and H. R. Harvey

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El Nino Southern Oscillation-Related Salinity Variations Recorded in the Skeletal Geochemistry of a Porites Coral from Espiritu Santo, Vanuatu, K. H. Kilbourne, Terrence M. Quinn, Frederick W. Taylor, Thierry Delcroix, and Yves Gouriou

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A Fossil Coral Perspective on Western Tropical Pacific Climate Similar to 350 Ka, K. H. Kilbourne, Terrence M. Quinn, and F. W. Taylor

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Processes of Coastal Upwelling and Carbon Flux in the Cariaco Basin, Frank E. Muller-Karger, R. Varela, R. Thunell, Y. Astor, Mingrui Zhang, R. Luerssen, and C. Hu

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Synoptic Water Clarity Assessment in the Florida Keys Using Diffuse Attenuation Coefficient Estimated from Landsat Imagery, D. Palandro, C. Hu, S. Andréfouët, and Frank E. Muller-Karger

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Atmospheric Concentrations and Dry Deposition Rates of Polycyclic Aromatic Hydrocarbons (PAHs) for Tampa Bay, Florida, USA, Noreen Poor, Raphael Tremblay, Venkat R. Bhethanabotla, Erick Swartz, Mark E. Luther, and Scott Campbell

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Stability of North Atlantic Water Masses in Face of Pronounced Climate Variability During the Pleistocene, M. E. Raymo, D. W. Oppo, Benjamin P. Flower, D. A. Hodell, J. F. McManus, K. A. Venz, K. F. Kleiven, and K. McIntyre

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On the Seasonal Correlation of Surface Particle Fields with Wind Stress and Mississippi Discharge in the Northern Gulf of Mexico, J. E. Salisbury, J. W. Campbell, E. Linder, L. David Meeker, Frank E. Muller-Karger, and C. Vörösmarty

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Paleoceanographic Change During the Middle Miocene Climate Revolution: An Antarctic Stable Isotope Perspective, Amelia E. Shevenell and James P. Kennett

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Middle Miocene Southern Ocean Cooling and Antarctic Cryosphere Expansion, Amelia E. Shevenell, James P. Kennett, and David W. Lea

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Radionuclide Fluxes and Particle Scavenging in Cariaco Basin, J. M. Smoak, C. Benitez-Nelson, W. S. Moore, R. C. Thunell, Y. Astor, and Frank E. Muller-Karger

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Monthly Variation of Pigment Concentrations and Seasonal Winds in China'S Marginal Seas, D. L. Tang, I. H. Ni, Frank E. Muller-Karger, and I. S. Oh

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Nitrogen Isotope Dynamics of the Cariaco Basin, Venezuela, Robert C. Thunell, Daniel M. Sigman, Frank E. Muller-Karger, Yrene Astor, and Ramon Varela

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Decadal Shifts in Biophysical Forcing of Arctic Marine Food Webs: Numerical Consequences, John J. Walsh, Dwight A. Dieterle, Wieslaw Maslowski, and Terry E. Whitledge

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Phytoplankton Community Structure and Productivity Along the Axis of the Mississippi River Plume in Oligotrophic Gulf of Mexico Waters, Boris Wawrik and John H. Paul

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High Rates of Ammonium Recycling Drive Phytoplankton Productivity in the Offshore Mississippi River Plume, Boris Wawrik, John H. Paul, Deborah A. Bronk, David John, and Mike Gray

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Coral-associated Archaea, Linda Wegley, Yanan Yu, Mya Breitbart, Veronica Casas, David Kline, and Forest Rohwer

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Coastal Ocean Circulation Influences on Remotely Sensed Optical Properties: a West Florida Shelf Case Study, Robert H. Weisberg, Ruoying He, Gary J. Kirkpatrick, Frank E. Muller-Karger, and John J. Walsh

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Bleaching in Amphistegina gibbosa D'Orbigny (Class Foraminifera): Observations from Laboratory Experiments Using Visible and Ultraviolet Light, Dana E. Williams and Pamela Hallock

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Nutrient Stimulation of Lytic Phage Production in Bacterial Populations of the Gulf of Mexico, S. J. Williamson and John H. Paul

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Oceanographic Controls on the Carbon Isotopic Compositions of Sinking Particles from the Cariaco Basin, M. Woodworth, M. Goñi, E. Tappa, K. Tedesco, R. Thunell, Y. Astor, R. Varela, J. Rafael Diaz-Ramos, and Frank E. Muller-Karger

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Tide, Bouyancy, and Wind-Driven Circulation of the Charlotte Harbor Estuary: A Model Study, Lianyuan Zheng and Robert H. Weisberg

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Tide, Buoyancy, and Wind-Driven Circulation of the Charlotte Harbor Estuary: A Model Study, Lianyuan Zheng and Robert H. Weisberg

Submissions from 2003

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A Top–Down, Multidisciplinary Study of the Structure and Function of the Pack-Ice Ecosystem in the Eastern Ross Sea, Antarctica, S. F. Ackley, J. L. Bengtson, P. Boveng, M. Castellini, Kendra L. Daly, S. Jacobs, G. L. Kooyman, J. Laake, L. Quetin, and R. Ross

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Multi-Scale Remote Sensing of Microbial Mats in an Atoll Environment, S. Andréfouët, E. J. Hochberg, C. Payri, M. J. Atkinson, Frank E. Muller-Karger, and H. Ripley

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Multi-Site Evaluation of Ikonos Data for Classification of Tropical Coral Reef Environments, S. Andréfouët, P. Kramer, D. Torres-Pulliza, K. E. Joyce, E. J. Hochberg, R. Garza-Pérez, P. J. Mumby, B. Riegl, H. Yamano, W.H. H. White, M. Zubia, J. Brock, S. R. Phinn, A. Naseer, and B. G. Hatcher

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Influence of the Spatial Resolution of Seawifs, Landsat-7, Spot, and International Space Station Data on Estimates of Landscape Parameters of Pacific Ocean Atolls, S. Andréfouët, J. A. Robinson, C. Hu, G. C. Feldman, B. Salvat, C. Payri, and Frank E. Muller-Karger

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Seasonal and Interannual Variation in the Hydrography of the Cariaco Basin: Implications for Basin Ventilation, Y. Astor, Frank E. Muller-Karger, and M. I. Scranton

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Metagenomic Analyses of an Uncultured Viral Community from Human Feces, Mya Breitbart, Ian Hewson, Ben Felts, Joseph Mahaffy, James Nulton, Peter Salamon, and Forest Rohwer

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Calibration and Verification of Jason-1 Using Global Along-Track Residuals with TOPEX, Don Chambers, J. C. Ries, and T. J. Urban

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Calibration and Verification of Jason-1 Using Global Along-Track Residuals with TOPEX Special Issue: Jason-1 Calibration/Validation, Don Chambers, J. C. Ries, and T. J. Urban

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Ocean Observer Study: A Proposed National Asset to Augment the Future U. S. Operational Satellite System, John D. Cunningham, Don P. Chambers, Curtiss O. Davis, Andrew Gerber, Rosalind Hetz, James P. McGuire, and William Pichel

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Phytoplankton Assemblage Structure and Primary Productivity Along 170° W in the South Pacific Ocean, Giacomo R. DiTullio, Mark E. Geesey, David R. Jones, Kendra L. Daly, Lisa Campbell, and Walker O. Smith

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Biogenic Fluxes in the Cariaco Basin: a Combined Study of Sinking Particulates and Underlying Sediments, M. A. Goñi, H. L. Aceves, R. C. Thunell, E. Tappa, D. Black, Y. Astor, R. Varela, and Frank E. Muller-Karger

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A Synthetic Float Analysis of Upper-Limb Meridional Overturning Circulation Interior Ocean Pathways in the Tropical/Subtropical Atlantic, G. R. Halliwell Jr., Robert H. Weisberg, and D. A. Mayer

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Foraminifera as Bioindicators in Coral Reef Assessment and Monitoring: the Foram Index, Pamela Hallock, Barbara H. Lidz, Elizabeth Cockey-Burkhard, and Kelly B. Donnelly

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Foraminifera as Bioindicators in Coral Reef Assessment and Monitoring: The Foram Index, Pamela Hallock, Barbara H. Lidz, Elizabeth M. Cockey-Burkhard, and Kelly B. Donnelly

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A Loop Current Intrusion Case Study on the West Florida Shelf, Ruoying He and Robert H. Weisberg

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West Florida Shelf Circulation and Temperature Budget for the 1998 Fall Transition, Ruoying He and Robert H. Weisberg

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A Cloud-Free, Satellite-Derived, Sea Surface Temperature Analysis for the West Florida Shelf, Ruoying He, Robert H. Weisberg, Haiying Zhang, Frank E. Muller-Karger, and Robert W. Helber

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Interannual Volume Variability in the Tropical Pacific, Christina L. Holland and Gary T. Mitchum

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The 2002 Ocean Color Anomaly in the Florida Bight: a Cause of Local Coral Reef Decline?, C. Hu, K. E. Hackett, M. K. Callahan, S. Andréfouët, J. L. Wheaton, J. W. Porter, and Frank E. Muller-Karger

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Application of an Optimization Algorithm to Satellite Ocean Color Imagery: a Case Study in Southwest Florida Coastal Waters, C. Hu, Z. Lee, Frank E. Muller-Karger, and Kendall L. Carder

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Comparison of Ship and Satellite Bio-Optical Measurements on the Continental Margin of the Ne Gulf of Mexico, C. Hu, Frank E. Muller-Karger, D. C. Biggs, Kendall L. Carder, B. Nababan, D. Nadeau, and J. Vanderbloeman

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Modis Detects Oil Spills in Lake Maracaibo, Venezuela, C. Hu, Frank E. Muller-Karger, C. Taylor, D. Myhre, Brock Murch, A. L. Odriozola, and G. Godoy

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Dispersal of the Suwannee River Plume Over the West Florida Shelf: Simulation and Observation of the Optical and Biochemical Consequences of a Flushing Event, Jason K. Jolliff, John J. Walsh, Ruoying He, Robert H. Weisberg, Antoya Stovall-Leonard, Paula G. Coble, Robyn Conmy, Cynthia A. Heil, Bisman Nababan, Haiying Zhang, Chuanmin Hu, and Frank E. Muller-Karger

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Development of Small Carbonate Banks on the South Florida Platform Margin: Response to Sea Level and Climate Change, David Mallinson, Albert C. Hine, Pamela Hallock, Stanley D. Locker, Eugene Shinn, David F. Naar, Brian Donahue, and Douglas Weaver

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Use of Fluorescently Labeled Phage in the Detection and Identification of Bacterial Species, P. A. Mosier-Boss, S. H. Lieberman, J. M. Andrews, Forest Rohwer, Linda Wegley, and Mya Breitbart

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Carbonate Systems along Nutrient and Temperature Gradients: Some Sedimentological and Geochemical Constraints, Maria Mutti and Pamela Hallock

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Change Detection in Coral Reef Communities Using Ikonos Satellite Sensor Imagery and Historic Aerial Photographs, D. Palandro, S. Andréfouët, P. Dustan, and Frank E. Muller-Karger

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Detection of Changes in Coral Reef Communities Using Landsat-5 Tm and Landsat-7 Etm+ Data, D. Palandro, S. Andréfouët, Frank E. Muller-Karger, P. Dustan, C. Hu, and P. Hallock

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Millennial- to Century-Scale Variability in Gulf of Mexico Holocene Climate Records, R. Z. Poore, H. J. Dowsett, S. Verardo, and Terrence M. Quinn

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SEA-COOS: A Model for a Multi-State, Multi-Institutional Regional Observation System, Harvey E. Seim, Bob Bacon, Charlie Barans, Madilyn Fletcher, Keith Gates, Rick Jahnke, Edward Kearns, Russ Lea, Mark E. Luther, Christopher N. K. Mooers, Jim Nelson, Dwayne Porter, Lynn K. Shay, Mike Spranger, Jack Thigpen, Robert H. Weisberg, and Francisco Werner

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Energetic Baroclinic Super-Tidal Oscillations on the Southeast Florida Shelf, Alexander Soloviev, Mark E. Luther, and Robert H. Weisberg

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Coastal Observatory Investigates Energetic Current Oscillations on Southeast Florida Shelf, Alexander Soloviev, Rebekah J. Walker, Robert H. Weisberg, and Mark E. Luther

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Ultrastructural Responses in Field-Bleached and Experimentally Stressed Amphistegina gibbosa (Class Foraminifera), Helen K. Talge and Pamela Hallock

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Large Scale Ocean Circulation from the GRACE GGM01 Geoid, B. D. Tapley, D. Chambers, S. Bettadpur, and J. C. Ries

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Chlorophyll Dispersal by Eddy-Eddy Interactions in the Gulf of Mexico, M. Toner, A. D. Kirwan, A. C. Poje, L. H. Kantha, Frank E. Muller-Karger, and C. K. R. T. Jones

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SFOMC: A Successful Navy And Academic Partnership Providing Sustained Ocean Observation Capabilities in the Florida Straits, William Venezia, William Baxley, Peter Tatro, Manhar Dhanak, Rick Driscoll, Pierre-Philippe Beaujean, Steven Shock, Stewart Glegg, Edgar An, Mark E. Luther, and Robert H. Weisberg