This is a select list of works produced by the faculty of the USF Department of Cell Biology, Microbiology, and Molecular Biology. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

Follow

Submissions from 2016

PDF

Quantitative proteomic profiling reveals hepatic lipogenesis and liver X receptor activation in the PANDER transgenic model., Mark G. Athanason, Whitney A. Ratliff, Dale Chaput, Catherine B. MarElia, Melanie N. Kuehl, Stanley M. Stevens Jr., and Brant R. Burkhardt

PDF

The Exceptionally High Reactivity of Cys 621 is Critical for Electrophilic Activation of the Sensory Nerve Ion Channel TRPA1, Parmvir K. Bahia, Thomas A. Parks, Katherine R. Stanford, David A. Mitchell, Sameer Varma, Stanley M. Stevens Jr., and Thomas E. Taylor-Clark

PDF

Staphylococcus aureus Coordinates Leukocidin Expression and Pathogenesis by Sensing Metabolic Fluxes via RpiRc, Divya Balasubramanian, Elizabeth A Ohneck, Jessica Chapman, Andy Weiss, Min Kyung Kim, Tamara Reyes-Robles, Judy Zhong, Lindsey N. Shaw, Desmond S. Lun, Beatrix Ueberheide, Bo Shopsin, and Victor J Torres

PDF

Identification of Novel Cyclic Lipopeptides from a Positional Scanning Combinatorial Library with Enhanced Antibacterial and Antibiofilm Activities, Nina Bionda, Renee M. Fleeman, César de la Fuente-Núñez, Maria C. Rodriguez, Fany Reffuveille, Lindsey N. Shaw, Irena Pastar, Stephen C Davis, Robert E W Hancock, and Predrag Cudic

PDF

Intrinsic Disorder in Transmembrane Proteins: Roles in Signaling and Topology Prediction, Jérôme Bürgi, Bin Xue, Vladimir N Uversky, and F Gisou van der Goot

PDF

Genome-wide Annotation, Identification, and Global Transcriptomic Analysis of Regulatory or Small RNA Gene Expression in Staphylococcus aureus, Ronan K. Carroll, Andy Weiss, William H. Broach, Richard E Wiemels, Austin B. Mogen, Kelly C. Rice, and Lindsey N. Shaw

PDF

Subcellular and in-vivo Nano-Endoscopy, Surya Venkatasekhar Cheemalapati, John Winskas, Hao Wang, Karthik Konnaiyan, Arseny Zhdanov, Alison Roth, Swamy Rakesh Adapa, Andrew Deonarine, Rays H. Y. Jiang, and Anna Pyayt

PDF

The Two-Component System CpxRA Negatively Regulates the Locus of Enterocyte Effacement of Enterohemorrhagic Escherichia coli Involving σ32 and Lon protease, Miguel A. De la Cruz, Jason K. Morgan, Miguel A. Ares, Jorge A. Yáñez-Santos, James T. Riordan, and Jorge A. Girón

PDF

Measurement of Elastic Modulus of Collagen Type I Single Fiber, Pavel Dutov, Olga Antipova, Sameer Varma, Joseph P R O Orgel, and Jay D Schieber

PDF

MIR494 Reduces Renal Cancer Cell Survival Coinciding with Increased Lipid Droplets and Mitochondrial Changes, Punashi Dutta, Edward Haller, Arielle Sharp, and Meera Nanjundan

PDF

NEDDylation Promotes Stress Granule Assembly, Aravinth Kumar Jayabalan, Anthony Sanchez, Ra Young Park, Sang Pil Yoon, Gum-Yong Kang, Je-Hyun Baek, Paul Anderson, Younghoon Kee, and Takbum Ohn

PDF

Role of Deubiquitinating Enzymes in DNA Repair, Younghoon Kee and Tony T. Huang

PDF

Identification of Neuregulin-2 as a Novel Stress Granule Component, Jin Ah Kim, Aravinth K. Jayabalan, Vinoth K. Kothandan, Ramesh Mariappan, Younghoon Kee, and Takbum Ohn

PDF

Structural and Activity Characterization of Human PHPT1 after Oxidative Modification, Daniel R. Martin, Priyanka Dutta, Shikha Mahajan, Sameer Varma, and Stanley M. Stevens Jr.

PDF

Global Regulator of Virulence A (GrvA) Coordinates Expression of Discrete Pathogenic Mechanisms in Enterohemorrhagic Escherichia coli through Interactions with GadW-GadE, Jason K. Morgan, Ronan K. Carroll, Carly M. Harro, Khoury W Vendura, Lindsey N. Shaw, and James T. Riordan

PDF

The Heat Shock Transcription Factor HSF1 Induces Ovarian Cancer Epithelial-Mesenchymal Transition in a 3D Spheroid Growth Model., Chase D Powell, Trillitye R Paullin, Candice Aoisa, Christopher J Menzie, Ashley Ubaldini, and Sandy D. Westerheid

PDF

Using Student Writing and Lexical Analysis to Reveal Student Thinking about the Role of Stop Codons in the Central Dogma, Luanna B Prevost, Michelle K. Smith, and Jennifer K. Knight

PDF

Direct Analysis in Real Time (DART) of an Organothiophosphate at Ultrahigh Resolution by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry and Tandem Mass Spectrometry, Laszlo Prokai and Stanley M. Stevens Jr.

PDF

Effect of Hydroxychloroquine and Characterization of Autophagy in a Mouse Model of Endometriosis, A. Ruiz, S. Rockfield, N. Taran, E. Haller, Robert Engelman, I Flores, P Panina-Bordignon, and Meera Nanjundan

PDF

miR146a-Mediated Targeting of FANCM during Inflammation Compromises Genome Integrity, Devakumar Sundaravinayagam, Hye R. Kim, Ting T. Wu, Hyun H. Kim, Hyun-Seo Lee, Semo Jun, Jeong-Heon Cha, Younghoon Kee, Ho J. You, and Jung-Hee Lee

PDF

A Novel Rrm3 Function in Restricting DNA Replication via an Orc5-Binding Domain Is Genetically Separable from Rrm3 Function as an ATPase/Helicase in Facilitating Fork Progression, Salahuddin Syed, Claus Desler, Lene J Rasmussen, and Kristina H Schmidt

PDF

Molecular Typing and Virulence Analysis of Multidrug Resistant Klebsiella pneumoniae Clinical Isolates Recovered from Egyptian Hospitals, Reham Wasfi, Walid F. Elkhatib, and Hossam M. Ashour

PDF

The Skp1 Homologs SKR-1/2 Are Required for the Caenorhabditis elegans SKN-1 Antioxidant/Detoxification Response Independently of p38 MAPK., Cheng-Wei Wu, Andrew Deonarine, Aaron Przybysz, Kevin Strange, and Keith P. Chloe

PDF

Integrated Strategy Improves the Prediction Accuracy of miRNA in Large Dataset., Bin Xue, David Lipps, and Sree Devineni

PDF

Characterization of a SILAC Method for Proteomic Analysis of Primary Rat Microglia, Ping Zhang, Ashley E. Culver-Cochran, Stanley M. Stevens Jr., and Bin Liu

PDF

Self-Regulation of Functional Pathways by Motifs Inside the Disordered Tails of Beta-Catenin, Bi Zhao and Bin Xue

Submissions from 2015

PDF

Cellular Defects Caused by Hypomorphic Variants of the Bloom Syndrome Helicase Gene BLM, Vivek M. Shastri and Kristina H. Schmidt

Submissions from 2014

PDF

DBC1/CCAR2 and CCAR1 Are Largely Disordered Proteins that Have Evolved from One Common Ancestor, Jessica Brunquell, Jia Yuan, Aqeela Erwin, Sandy D. Westerheid, and Bin Xue

PDF

Inactivating UBE2M Impacts the DNA Damage Response and Genome Integrity Involving Multiple Cullin Ligases, Scott Cukras, Nicholas Morffy, Takbum Ohn, and Younghoon Kee

PDF

D-beta-Hydroxybutyrate Extends Lifespan in , Clare Edwards, John Canfield, Neil Copes, Muhammad Rehan, David Lipps, and Patrick C. Bradshaw

PDF

Relationship Between Gene Duplicability and Diversifiability in the Topology of Biochemical Networks, Zhanyong Guo, Wen Jiang, Nuno Lages, Wade Borcherds, and Degeng Wang

PDF

σ(N) -Dependent Control of Acid Resistance and the Locus of Enterocyte Effacement in Enterohemorrhagic Escherichia Coli is Activated by Acetyl Phosphate in a Manner Requiring Flagellar Regulator FlhDC and the σ(S) Antagonist FliZ, Avishek Mitra, Pamela A. Fay, Khoury W. Vendura, Zimrisha Alla, Ronan K. Carroll, Lindsey N. Shaw, and James T. Riordan

PDF

Evaluation of a Method for Nitrotyrosine Site Identification and Relative Quantitation Using a Stable Isotope-Labeled Nitrated Spike-In Standard and High Resolution Fourier Transform MS and MS/MS Analysis, Kent W. Seeley, Alison R. Fertig, Craig P. Dufresne, Joao P. C. Pinho, and Stanley M. Stevens Jr.

Submissions from 2010

PDF

Epistatic Relationships Between sarA and agr in Staphylococcus Aureus Biofilm Formation, Karen E. Beenken, Lara N. Mrak, Linda M. Griffin, Agnieszka K. Zielinska, Lindsey N. Shaw, Kelly C. Rice, Alexander R. Horswill, Kenneth W. Bayles, and Mark S. Smeltzer

PDF

Formation of Complex and Unstable Chromosomal Translocations in Yeast, Kristina H. Schmidt, Emilie Viebranz, Lillian Doerfler, Christina Lester, and Aaron Rubenstein

Submissions from 2008

PDF

Identification and Characterization of Sigma(S), a Novel Component of the Staphylococcus Aureus Stress and Virulence Responses, Lindsey N. Shaw, Catharina Lindholm, Tomasz K. Prajsnar, Halie K. Miller, Melanie C. Brown, Ewa Golonka, George C. Stewart, Andrej Tarkowski, and Jan Potempa

PDF

Factors Contributing to the Biofilm-Deficient Phenotype of Staphylococcus Aureus Sara Mutants, Laura H. Tsang, James E. Cassat, Lindsey N. Shaw, Karen E. Beenken, and Mark S. Smeltzer

Submissions from 2006

PDF

Suppression of Spontaneous Genome Rearrangements in Yeast DNA Helicase Mutants, Kristina H. Schmidt and Richard D. Kolodner