Document Type

Article

Publication Date

12-6-2016

Keywords

Adenosine Triphosphatases, Cell Cycle, Cell Cycle Proteins, Cell Division, Chromatin, DNA, DNA Damage, DNA Helicases, DNA Replication, DNA Topoisomerases, DNA-Binding Proteins, Origin Recognition Complex, Point Mutation, Replication Origin, S Phase Cell Cycle Checkpoints, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins

Digital Object Identifier (DOI)

https://doi.org/10.1371/journal.pgen.1006451

Abstract

In response to replication stress cells activate the intra-S checkpoint, induce DNA repair pathways, increase nucleotide levels, and inhibit origin firing. Here, we report that Rrm3 associates with a subset of replication origins and controls DNA synthesis during replication stress. The N-terminal domain required for control of DNA synthesis maps to residues 186-212 that are also critical for binding Orc5 of the origin recognition complex. Deletion of this domain is lethal to cells lacking the replication checkpoint mediator Mrc1 and leads to mutations upon exposure to the replication stressor hydroxyurea. This novel Rrm3 function is independent of its established role as an ATPase/helicase in facilitating replication fork progression through polymerase blocking obstacles. Using quantitative mass spectrometry and genetic analyses, we find that the homologous recombination factor Rdh54 and Rad5-dependent error-free DNA damage bypass act as independent mechanisms on DNA lesions that arise when Rrm3 catalytic activity is disrupted whereas these mechanisms are dispensable for DNA damage tolerance when the replication function is disrupted, indicating that the DNA lesions generated by the loss of each Rrm3 function are distinct. Although both lesion types activate the DNA-damage checkpoint, we find that the resultant increase in nucleotide levels is not sufficient for continued DNA synthesis under replication stress. Together, our findings suggest a role of Rrm3, via its Orc5-binding domain, in restricting DNA synthesis that is genetically and physically separable from its established catalytic role in facilitating fork progression through replication blocks.

Rights Information

Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.

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Yes

Citation / Publisher Attribution

PLoS GENETICS, v. 12, issue 12, art. e1006451

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